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BMCBI
2004
73views more  BMCBI 2004»
13 years 4 months ago
Use of a structural alphabet for analysis of short loops connecting repetitive structures
Background: Because loops connect regular secondary structures, analysis of the former depends directly on the definition of the latter. The numerous assignment methods, however, ...
Laurent Fourrier, Cristina Benros, Alexandre G. de...
BMCBI
2010
86views more  BMCBI 2010»
13 years 4 months ago
Mining protein loops using a structural alphabet and statistical exceptionality
Background: Protein loops encompass 50% of protein residues in available three-dimensional structures. These regions are often involved in protein functions, e.g. binding site, ca...
Leslie Regad, Juliette Martin, Grégory Nuel...
BMCBI
2007
100views more  BMCBI 2007»
13 years 4 months ago
Discovering structural motifs using a structural alphabet: Application to magnesium-binding sites
Background: For many metalloproteins, sequence motifs characteristic of metal-binding sites have not been found or are so short that they would not be expected to be metal-specifi...
Minko Dudev, Carmay Lim
BMCBI
2010
109views more  BMCBI 2010»
13 years 4 months ago
Structural alphabets derived from attractors in conformational space
Background: The hierarchical and partially redundant nature of protein structures justifies the definition of frequently occurring conformations of short fragments as `states'...
Alessandro Pandini, Arianna Fornili, Jens Kleinjun...
PRL
2010
173views more  PRL 2010»
13 years 3 months ago
Resolving stereo matching errors due to repetitive structures using model information
This study regards the problem of incorrect stereo matches due to the occurrence of repetitive structures in the scene. In stereo vision, repetitive structures may lead to “phan...
Björn Barrois, Marcus Konrad, Christian W&oum...