102 search results - page 1 / 21 » Using constraint programming for lattice protein folding |
GCB
1997
Springer
13 years 8 months ago
1997
Springer
We present a global search technique for nding the global minimal conformation of a sequence in Dill's HP-lattice model5;6 . The HP-lattice model is a simpli ed model of prot...
BMCBI
2010
13 years 4 months ago
2010
Background: The protein folding problem remains one of the most challenging open problems in computational biology. Simplified models in terms of lattice structure and energy func...
LPAR
2005
Springer
13 years 10 months ago
2005
Springer
Abstract. The paper describes the formalization and implementation of an efficient constraint programming framework operating on 3D crystal lattices. The framework is motivated an...
ISMB
1994
13 years 5 months ago
1994
Thispaperdescribesthe applicationof the Inductive Logic Programming0LP) program GOLEMto the discoveryof constraintsin the packingof beta-sheets in alpha/betaproteins. Theseconstra...
ISBRA
2007
Springer
13 years 10 months ago
2007
Springer
Abstract. The lattice approach to biological structural analysis was made popular by the HP model for protein folding, but had not been used previously for RNA secondary structure ...