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» Using constraint programming for lattice protein folding
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NIPS
2008
13 years 6 months ago
Clusters and Coarse Partitions in LP Relaxations
We propose a new class of consistency constraints for Linear Programming (LP) relaxations for finding the most probable (MAP) configuration in graphical models. Usual cluster-base...
David Sontag, Amir Globerson, Tommi Jaakkola
TAICPART
2010
IEEE
126views Education» more  TAICPART 2010»
13 years 3 months ago
Improved Testing through Refactoring: Experience from the ProTest Project
We report on how the Wrangler refactoring tool has been used to improve and transform test code for Erlang systems. This has been achieved through the removal of code clones, the i...
Huiqing Li, Simon J. Thompson
BMCBI
2006
134views more  BMCBI 2006»
13 years 5 months ago
Application of machine learning in SNP discovery
Background: Single nucleotide polymorphisms (SNP) constitute more than 90% of the genetic variation, and hence can account for most trait differences among individuals in a given ...
Lakshmi K. Matukumalli, John J. Grefenstette, Davi...
BMCBI
2008
130views more  BMCBI 2008»
13 years 5 months ago
IDEA: Interactive Display for Evolutionary Analyses
Background: The availability of complete genomic sequences for hundreds of organisms promises to make obtaining genome-wide estimates of substitution rates, selective constraints ...
Amy Egan, Anup Mahurkar, Jonathan Crabtree, Jonath...
CF
2009
ACM
13 years 11 months ago
Mapping the LU decomposition on a many-core architecture: challenges and solutions
Recently, multi-core architectures with alternative memory subsystem designs have emerged. Instead of using hardwaremanaged cache hierarchies, they employ software-managed embedde...
Ioannis E. Venetis, Guang R. Gao