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» Using motion planning to study protein folding pathways
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BMCBI
2005
117views more  BMCBI 2005»
13 years 5 months ago
Graph-representation of oxidative folding pathways
Background: The process of oxidative folding combines the formation of native disulfide bond with conformational folding resulting in the native three-dimensional fold. Oxidative ...
Vilmos Ágoston, Masa Cemazar, Lászl&...
BMCBI
2010
145views more  BMCBI 2010»
13 years 19 days ago
Directionality in protein fold prediction
Background: Ever since the ground-breaking work of Anfinsen et al. in which a denatured protein was found to refold to its native state, it has been frequently stated by the prote...
Jonathan J. Ellis, Fabien P. E. Huard, Charlotte M...
BMCBI
2010
107views more  BMCBI 2010»
13 years 19 days ago
Interaction prediction and classification of PDZ domains
Background: PDZ domain is a well-conserved, structural protein domain found in hundreds of signaling proteins that are otherwise unrelated. PDZ domains can bind to the C-terminal ...
Sibel Kalyoncu, Ozlem Keskin, Attila Gürsoy
BMCBI
2010
131views more  BMCBI 2010»
13 years 19 days ago
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity
Background: The dynamic motions of many proteins are central to their function. It therefore follows that the dynamic requirements of a protein are evolutionary constrained. In or...
Márton Münz, Rune B. Lyngsø, Jo...
SAC
2005
ACM
13 years 11 months ago
Finding saddle points using stability boundaries
The task of finding saddle points on potential energy surfaces plays a crucial role in understanding the dynamics of a micro-molecule as well as in studying the folding pathways ...
Chandan K. Reddy, Hsiao-Dong Chiang