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CF
2007
ACM
13 years 8 months ago
Parallel genomic sequence-search on a massively parallel system
In the life sciences, genomic databases for sequence search have been growing exponentially in size. As a result, faster sequencesearch algorithms to search these databases contin...
Oystein Thorsen, Brian E. Smith, Carlos P. Sosa, K...
FPL
2009
Springer
79views Hardware» more  FPL 2009»
13 years 9 months ago
A reconfigurable architecture for the Phylogenetic Likelihood Function
As FPGA devices become larger, more coarse-grain modules coupled with large scale reconfigurable fabric become available, thus enabling new classes of applications to run effici...
Nikolaos Alachiotis, Alexandros Stamatakis, Euripi...
FPL
2010
Springer
146views Hardware» more  FPL 2010»
13 years 2 months ago
Software Managed Distributed Memories in MPPAs
When utilizing reconfigurable hardware there are many applications that will require more memory than is available in a single hardware block. While FPGAs have tools and mechanisms...
Robin Panda, Jimmy Xu, Scott Hauck
TC
2010
13 years 2 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...

Lecture Notes
1005views
15 years 4 months ago
Lectures on reconfigurable computing
Driven by recent innovations in Field-Programmable Gate Arrays (FPGAs), reconfigurable computing offers unique ways to accelerate key algorithms. FPGAs offer a programmable logic f...
Sherief Reda