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TREC
2003
13 years 6 months ago
Searching for geneRIFs: Concept-Based Query Expansion and Bayes Classification
k gene annotations. Our indexing machinery produces per indexed MEDLINE abstract a list of concepts with an accompanying weight, termed a fingerprint. Searching is done by matching...
Rob Jelier, Martijn J. Schuemie, C. Christiaan van...
SIGUCCS
2003
ACM
13 years 10 months ago
Being Sam Malone: customer service on a campus where "Everybody Knows Your Name"
Working on a small campus has many advantages: Familiarity with the majority of faculty and staff, in-depth knowledge of how systems interact, adding the personal touch to each in...
Mark Watts
BMCBI
2008
147views more  BMCBI 2008»
13 years 5 months ago
Assessment of disease named entity recognition on a corpus of annotated sentences
Background: In recent years, the recognition of semantic types from the biomedical scientific literature has been focused on named entities like protein and gene names (PGNs) and ...
Antonio Jimeno-Yepes, Ernesto Jiménez-Ruiz,...
OTM
2009
Springer
13 years 9 months ago
Detecting Inconsistencies in the Gene Ontology Using Ontology Databases with Not-gadgets
We present ontology databases with not-gadgets, a method for detecting inconsistencies in an ontology with large numbers of annotated instances by using triggers and exclusion depe...
Paea LePendu, Dejing Dou, Doug Howe
BMCBI
2008
137views more  BMCBI 2008»
13 years 5 months ago
Evading the annotation bottleneck: using sequence similarity to search non-sequence gene data
Background: Non-sequence gene data (images, literature, etc.) can be found in many different public databases. Access to these data is mostly by text based methods using gene name...
Michael J. Gilchrist, Mikkel B. Christensen, Richa...