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JCC
2006
67views more  JCC 2006»
13 years 4 months ago
Heuristic molecular lipophilicity potential (HMLP): Lipophilicity and hydrophilicity of amino acid side chains
: Heuristic molecular lipophilicity potential (HMLP) is applied in the study of lipophilicity and hydrphilcity of 20 natural amino acids side chains. The HMLP parameters, surface a...
Qishi Du, Da-Peng Li, Wen-Zhang He, Kuo-Chen Chou
BMCBI
2006
60views more  BMCBI 2006»
13 years 4 months ago
Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes
Background: Amino acids in proteins are not used equally. Some of the differences in the amino acid composition of proteins are between species (mainly due to nucleotide compositi...
Alberto Pasamontes, Santiago Garcia-Vallvé
NAR
2002
85views more  NAR 2002»
13 years 4 months ago
CKAAPs DB: a Conserved Key Amino Acid Positions DataBase
The Conserved Key Amino Acid Positions DataBase (CKAAPs DB) provides access to an analysis of structurally similar proteins with dissimilar sequences where key residues within a c...
Wilfred W. Li, Boojala V. B. Reddy, John G. Tate, ...
BMCBI
2006
95views more  BMCBI 2006»
13 years 4 months ago
Predicting DNA-binding sites of proteins from amino acid sequence
Background: Understanding the molecular details of protein-DNA interactions is critical for deciphering the mechanisms of gene regulation. We present a machine learning approach f...
Changhui Yan, Michael Terribilini, Feihong Wu, Rob...
BMCBI
2006
130views more  BMCBI 2006»
13 years 4 months ago
An interactive visualization tool to explore the biophysical properties of amino acids and their contribution to substitution ma
Background: Quantitative descriptions of amino acid similarity, expressed as probabilistic models of evolutionary interchangeability, are central to many mainstream bioinformatic ...
Blazej Bulka, Marie desJardins, Stephen J. Freelan...