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ALMOB
2008
43views more  ALMOB 2008»
13 years 4 months ago
On the optimality of the neighbor-joining algorithm
Kord Eickmeyer, Peter Huggins, Lior Pachter, Rurik...
ALMOB
2008
93views more  ALMOB 2008»
13 years 4 months ago
A weighted average difference method for detecting differentially expressed genes from microarray data
Background: Identification of differentially expressed genes (DEGs) under different experimental conditions is an important task in many microarray studies. However, choosing whic...
Koji Kadota, Yuji Nakai, Kentaro Shimizu
ALMOB
2008
69views more  ALMOB 2008»
13 years 4 months ago
Learning from positive examples when the negative class is undetermined- microRNA gene identification
Background: The application of machine learning to classification problems that depend only on positive examples is gaining attention in the computational biology community. We an...
Malik Yousef, Segun Jung, Louise C. Showe, Michael...
ALMOB
2008
95views more  ALMOB 2008»
13 years 4 months ago
A stitch in time: Efficient computation of genomic DNA melting bubbles
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses th...
Eivind Tøstesen
ALMOB
2008
160views more  ALMOB 2008»
13 years 4 months ago
Syntenator: Multiple gene order alignments with a gene-specific scoring function
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
Christian Rödelsperger, Christoph Dieterich