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BIOINFORMATICS
2012
11 years 7 months ago
SSuMMo: rapid analysis, comparison and visualization of microbial communities
Motivation: Next-generation sequencing methods are generating increasingly massive datasets, yet still do not fully capture genetic diversity in the richest environments. To under...
Alex L. B. Leach, James P. J. Chong, Kelly R. Rede...
BIOINFORMATICS
2012
11 years 7 months ago
Epigenetic priors for identifying active transcription factor binding sites
Motivation Accurate knowledge of the genome-wide binding of transcription factors in a particular cell type or under a particular condition is necessary for understanding transcri...
Gabriel Cuellar-Partida, Fabian A. Buske, Robert C...
CORR
2012
Springer
205views Education» more  CORR 2012»
12 years 14 days ago
Check Your Data Freedom: A Taxonomy to Assess Life Science Database Openness
Molecular biology data are subject to terms of use that vary widely between databases and curating institutions. This research presents a taxonomy of contractual and technical res...
Mélanie Dulong de Rosnay
EDBT
2012
ACM
228views Database» more  EDBT 2012»
11 years 7 months ago
Finding maximal k-edge-connected subgraphs from a large graph
In this paper, we study how to find maximal k-edge-connected subgraphs from a large graph. k-edge-connected subgraphs can be used to capture closely related vertices, and findin...
Rui Zhou, Chengfei Liu, Jeffrey Xu Yu, Weifa Liang...