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CMSB
2006
Springer
13 years 9 months ago
Compositional Reachability Analysis of Genetic Networks
Genetic regulatory networks have been modeled as discrete transition systems by many approaches, benefiting from a large number of formal verification algorithms available for the ...
Gregor Gößler
CMSB
2006
Springer
13 years 9 months ago
Regulatory Network Reconstruction Using Stochastic Logical Networks
Abstract. This paper presents a method for regulatory network reconstruction from experimental data. We propose a mathematical model for regulatory interactions, based on the work ...
Bartek Wilczynski, Jerzy Tiuryn
CMSB
2006
Springer
13 years 9 months ago
Rewriting Game Theory as a Foundation for State-Based Models of Gene Regulation
We present a game-theoretic foundation for gene regulatory analysis based on the recent formalism of rewriting game theory. Rewriting game theory is discrete and comes with a graph...
Chafika Chettaoui, Franck Delaplace, Pierre Lescan...
CMSB
2006
Springer
13 years 9 months ago
Randomization and Feedback Properties of Directed Graphs Inspired by Gene Networks
Having in mind the large-scale analysis of gene regulatory networks, we review a graph decimation algorithm, called "leaf-removal", which can be used to evaluate the feed...
M. Cosentino Lagomarsino, P. Jona, B. Bassetti
CMSB
2006
Springer
13 years 9 months ago
Possibilistic Approach to Biclustering: An Application to Oligonucleotide Microarray Data Analysis
Abstract. The important research objective of identifying genes with similar behavior with respect to different conditions has recently been tackled with biclustering techniques. I...
Maurizio Filippone, Francesco Masulli, Stefano Rov...