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CPM
1999
Springer
92views Combinatorics» more  CPM 1999»
13 years 9 months ago
Physical Mapping with Repeated Probes: The Hypergraph Superstring Problem
We focus on the combinatorial analysis of physical mapping with repeated probes. We present computational complexity results, and we describe and analyze an algorithmic strategy. W...
Serafim Batzoglou, Sorin Istrail
CPM
1999
Springer
99views Combinatorics» more  CPM 1999»
13 years 9 months ago
On the Complexity of Positional Sequencing by Hybridization
In sequencing by hybridization (SBH), one has to reconstruct a sequence from its l-long substrings. SBH was proposed as an alternative to gel-based DNA sequencing approaches, but ...
Amir Ben-Dor, Itsik Pe'er, Ron Shamir, Roded Shara...
COCOON
1999
Springer
13 years 9 months ago
Distributionally-Hard Languages
Cai and Selman [CS99] defined a modification of Levin’s notion of average polynomial time and proved, for every P-bi-immune language L and every polynomial-time computable dis...
Lance Fortnow, Aduri Pavan, Alan L. Selman
CPM
1999
Springer
107views Combinatorics» more  CPM 1999»
13 years 9 months ago
A General Practical Approach to Pattern Matching over Ziv-Lempel Compressed Text
We address the problem of string matching on Ziv-Lempel compressed text. The goal is to search a pattern in a text without uncompressing it. This is a highly relevant issue to keep...
Gonzalo Navarro, Mathieu Raffinot
COCOON
1999
Springer
13 years 9 months ago
An External Memory Data Structure for Shortest Path Queries
We present results related to satisfying shortest path queries on a planar graph stored in external memory. Let N denote the number of vertices in the graph and let sort(N) denote...
David A. Hutchinson, Anil Maheshwari, Norbert Zeh