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CPM
2006
Springer
13 years 9 months ago
2006
Springer
Many algorithms for motif finding that are commonly used in bioinformatics start by sampling r potential motif occurrences from n input sequences. The motif is derived from these s...
CPM
2006
Springer
13 years 9 months ago
2006
Springer
Abstract. Protein structure analysis is one of the most important research issues in the post-genomic era, and faster and more accurate query data structures for such 3-D structure...
CPM
2006
Springer
13 years 9 months ago
2006
Springer
Abstract. Local similarity is an important tool in comparative analysis of biological sequences, and is therefore well studied. In particular, the Smith-Waterman technique and its ...
CPM
2006
Springer
13 years 9 months ago
2006
Springer
Abstract. In the context of non-coding RNA (ncRNA) multiple structural alignment, Davydov and Batzoglou introduced in [7] the problem of finding the largest nested linear graph tha...
CPM
2004
Springer
13 years 11 months ago
2004
Springer
We consider succinct, or highly space-efficient, representations of a (static) string consisting of n pairs of balanced parentheses, that support natural operations such as findi...