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SODA
2012
ACM
191views Algorithms» more  SODA 2012»
11 years 7 months ago
Submatrix maximum queries in Monge matrices and Monge partial matrices, and their applications
We describe a data structure for submatrix maximum queries in Monge matrices or Monge partial matrices, where a query specifies a contiguous submatrix of the given matrix, and it...
Haim Kaplan, Shay Mozes, Yahav Nussbaum, Micha Sha...
BMCBI
2007
133views more  BMCBI 2007»
13 years 5 months ago
GenMAPP 2: new features and resources for pathway analysis
Background: Microarray technologies have evolved rapidly, enabling biologists to quantify genome-wide levels of gene expression, alternative splicing, and sequence variations for ...
Nathan Salomonis, Kristina Hanspers, Alexander C. ...
BMCBI
2007
200views more  BMCBI 2007»
13 years 5 months ago
Assessment of algorithms for high throughput detection of genomic copy number variation in oligonucleotide microarray data
Background: Genomic deletions and duplications are important in the pathogenesis of diseases, such as cancer and mental retardation, and have recently been shown to occur frequent...
Ágnes Baross, Allen D. Delaney, H. Irene Li...
BMCBI
2007
97views more  BMCBI 2007»
13 years 5 months ago
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, hu
Background: The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interp...
Rudi Alberts, Peter Terpstra, Menno Hardonk, Leoni...
BMCBI
2007
159views more  BMCBI 2007»
13 years 5 months ago
sIR: siRNA Information Resource, a web-based tool for siRNA sequence design and analysis and an open access siRNA database
Background: RNA interference has revolutionized our ability to study the effects of altering the expression of single genes in mammalian (and other) cells through targeted knockdo...
Jyoti K. Shah, Harold R. Garner, Michael A. White,...