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BMCBI
2006
60views more  BMCBI 2006»
13 years 5 months ago
Use of a multi-way method to analyze the amino acid composition of a conserved group of orthologous proteins in prokaryotes
Background: Amino acids in proteins are not used equally. Some of the differences in the amino acid composition of proteins are between species (mainly due to nucleotide compositi...
Alberto Pasamontes, Santiago Garcia-Vallvé
BMCBI
2006
150views more  BMCBI 2006»
13 years 5 months ago
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between clos
Background: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. Howev...
Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
BMCBI
2006
93views more  BMCBI 2006»
13 years 5 months ago
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse database
Background: Many of the most popular pre-processing methods for Affymetrix expression arrays, such as RMA, gcRMA, and PLIER, simultaneously analyze data across a set of predetermi...
Simon Katz, Rafael A. Irizarry, Xue Lin, Mark Trip...
JLP
2007
89views more  JLP 2007»
13 years 5 months ago
Universality and semicomputability for nondeterministic programming languages over abstract algebras
tract Algebras Wei Jiang∗ , Yuan Wang† , and Jeffery Zucker‡ September 11, 2006 The Universal Function Theorem (UFT) originated in 1930s with the work of Alan Turing, who p...
Wei Jiang, Yuan Wang, Jeffery I. Zucker
BMCBI
2006
137views more  BMCBI 2006»
13 years 5 months ago
Biologically relevant effects of mRNA amplification on gene expression profiles
Background: Gene expression microarray technology permits the analysis of global gene expression profiles. The amount of sample needed limits the use of small excision biopsies an...
Rachel I. M. van Haaften, Blanche Schroen, Ben J. ...