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    BMCBI
    2007
    115views more  BMCBI 2007»
    Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
    13 years 5 months ago
    Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
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    Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
    Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
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    NAR
    1998
    161views more  NAR 1998»
    Touring protein fold space with Dali/FSSP
    13 years 5 months ago
    Touring protein fold space with Dali/FSSP
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    The FSSP database and its new supplement, the Dali Domain Dictionary, present a continuously updated classification of all known 3D protein structures. The classification is deriv...
    Liisa Holm, Chris Sander
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    BMCBI
    2008
    134views more  BMCBI 2008»
    Prediction of protein-protein binding site by using core interface residue and support vector machine
    13 years 5 months ago
    Prediction of protein-protein binding site by using core interface residue and support vector machine
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    Background: The prediction of protein-protein binding site can provide structural annotation to the protein interaction data from proteomics studies. This is very important for th...
    Nan Li, Zhonghua Sun, Fan Jiang
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    BMCBI
    2004
    174views more  BMCBI 2004»
    Implications for domain fusion protein-protein interactions based on structural information
    13 years 5 months ago
    Implications for domain fusion protein-protein interactions based on structural information
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    Background: Several in silico methods exist that were developed to predict protein interactions from the copious amount of genomic and proteomic data. One of these methods is Doma...
    Jer-Ming Chia, Prasanna R. Kolatkar
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    BMCBI
    2005
    149views more  BMCBI 2005»
    The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
    13 years 5 months ago
    The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional pre
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    Background: The PD-(D/E)XK nuclease superfamily, initially identified in type II restriction endonucleases and later in many enzymes involved in DNA recombination and repair, is o...
    Jan Kosinski, Marcin Feder, Janusz M. Bujnicki
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