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JCC
2002
61views more  JCC 2002»
13 years 4 months ago
A fast pairwise evaluation of molecular surface area
: A fast and general analytical approach was developed for the calculation of the approximate van der Waals and solvent-accessible surface areas. The method is based on three basic...
Vladislav Vasilyev, Enrico O. Purisima
JCC
2002
80views more  JCC 2002»
13 years 4 months ago
Consistent treatment of inter- and intramolecular polarization in molecular mechanics calculations
: A protocol is described for the treatment of molecular polarization in force field calculations. The resulting model is consistent in that both inter- and intramolecular polariza...
Pengyu Ren, Jay W. Ponder
JCC
2002
67views more  JCC 2002»
13 years 4 months ago
Quasi-degenerate perturbation theory with general multiconfiguration self-consistent field reference functions
: The quasi-degenerate perturbation theory (QDPT) with complete active space (CAS) self-consistent field (SCF) reference functions is extended to the general multiconfiguration (MC...
Haruyuki Nakano, Ryuma Uchiyama, Kimihiko Hirao
JCC
2002
127views more  JCC 2002»
13 years 4 months ago
Effective Born radii in the generalized Born approximation: The importance of being perfect
: Generalized Born (GB) models provide, for many applications, an accurate and computationally facile estimate of the electrostatic contribution to aqueous solvation. The GB models...
Alexey Onufriev, David A. Case, Donald Bashford