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JCC
2002
127views more  JCC 2002»
13 years 5 months ago
Effective Born radii in the generalized Born approximation: The importance of being perfect
: Generalized Born (GB) models provide, for many applications, an accurate and computationally facile estimate of the electrostatic contribution to aqueous solvation. The GB models...
Alexey Onufriev, David A. Case, Donald Bashford
JCC
1998
71views more  JCC 1998»
13 years 5 months ago
Docking small ligands in flexible binding sites
: A novel procedure for docking ligands in a flexible binding site is presented. It relies on conjugate gradient minimization, during which nonbonded interactions are gradually swi...
Joannis Apostolakis, Andreas Plückthun, Amede...
JCC
2010
95views more  JCC 2010»
13 years 3 months ago
Computational studies on electron and proton transfer in phenol-imidazole-base triads
: The electron and proton transfer in phenol-imidazole-base systems (base 5 NH2 2 or OH2 ) were investigated by density-functional theory calculations. In particular, the role of b...
Shihai Yan, Sunwoo Kang, Tomoyuki Hayashi, Shaul M...
JCC
2010
113views more  JCC 2010»
13 years 3 months ago
MDLab: A molecular dynamics simulation prototyping environment
Molecular dynamics (MD) simulation involves solving Newton’s equations of motion for a system of atoms, by calculating forces and updating atomic positions and velocities over a...
Trevor M. Cickovski, Santanu Chatterjee, Jacob Wen...
JCC
2010
103views more  JCC 2010»
13 years 3 months ago
Conformational behavior of simple furanosides studied by optical rotation
: Experimental and theoretical specific optical rotations (OR) of anhydro, epithio, and epiminoderivatives of methyl tetrofuranosides in chloroform solutions have been compared an...
Jakub Kaminský, Ivan Raich, Katerina Tomc&a...