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BMCBI
2005
114views more  BMCBI 2005»
13 years 5 months ago
AutoFACT: An Automatic Functional Annotation and Classification Tool
Background: Assignment of function to new molecular sequence data is an essential step in genomics projects. The usual process involves similarity searches of a given sequence aga...
Liisa B. Koski, Michael W. Gray, B. Franz Lang, Ge...
BMCBI
2011
13 years 8 days ago
SNiPlay: a web-based tool for detection, management and analysis of SNPs. Application to grapevine diversity projects
Background: High-throughput re-sequencing, new genotyping technologies and the availability of reference genomes allow the extensive characterization of Single Nucleotide Polymorp...
Alexis Dereeper, Stéphane Nicolas, Loic Le ...
BMCBI
2008
152views more  BMCBI 2008»
13 years 5 months ago
JCoast - A biologist-centric software tool for data mining and comparison of prokaryotic (meta)genomes
Background: Current sequencing technologies give access to sequence information for genomes and metagenomes at a tremendous speed. Subsequent data processing is mainly performed b...
Michael Richter, Thierry Lombardot, Ivaylo Kostadi...
SIGMOD
2011
ACM
249views Database» more  SIGMOD 2011»
12 years 8 months ago
FlexMin: a flexible tool for automatic bug isolation in DBMS software
Debugging a database engine is an arduous task due to the complexity of the query workloads and systems. The first step in isolating a bug involves identifying a sequence of step...
Kristi Morton, Nicolas Bruno
BMCBI
2006
122views more  BMCBI 2006»
13 years 5 months ago
PET-Tool: a software suite for comprehensive processing and managing of Paired-End diTag (PET) sequence data
Background: We recently developed the Paired End diTag (PET) strategy for efficient characterization of mammalian transcriptomes and genomes. The paired end nature of short PET se...
Kuo Ping Chiu, Chee-Hong Wong, Qiongyu Chen, Prami...