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RECOMB
2015
Springer
3 years 1 months ago
Locating a Tree in a Phylogenetic Network in Quadratic Time
A fundamental problem in the study of phylogenetic networks is how to determine whether a phylogenetic network displays a phylogenetic tree or not. We develop a quadratic-time alg...
Philippe Gambette, Andreas D. M. Gunawan, Anthony ...
RECOMB
2015
Springer
3 years 1 months ago
A Symmetric Length-Aware Enrichment Test
Young et al. [14] showed that due to gene length bias the popular Fisher Exact Test should not be used to study the association between a group of differentially expressed (DE) ge...
David Manescu, Uri Keich
RECOMB
2015
Springer
3 years 1 months ago
CRISPR Detection from Short Reads Using Partial Overlap Graphs
Clustered regularly interspaced short palindromic repeats (CRISPR) are structured regions in bacterial and archaeal genomes, which are part of an adaptive immune system against pha...
Ilan Ben-Bassat, Benny Chor
RECOMB
2015
Springer
3 years 1 months ago
HapTree-X: An Integrative Bayesian Framework for Haplotype Reconstruction from Transcriptome and Genome Sequencing Data
Identifying phase information is biomedically important due to the association of complex haplotype effects, such as compound heterozygosity, with disease. As recent next-generat...
Emily Berger, Deniz Yörükoglu, Bonnie Be...
RECOMB
2015
Springer
3 years 1 months ago
Learning Microbial Interaction Networks from Metagenomic Count Data
Many microbes associate with higher eukaryotes and impact their vitality. In order to engineer microbiomes for host benefit, we must understand the rules of community assembly and...
Surojit Biswas, Meredith McDonald, Derek S. Lundbe...
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