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    » transAlign: using amino acids to facilitate the multiple ali...
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    BMCBI
    2005
    142views more  BMCBI 2005»
    transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
    13 years 4 months ago
    transAlign: using amino acids to facilitate the multiple alignment of protein-coding DNA sequences
    Download  www.biomedcentral.com
    Background: Alignments of homologous DNA sequences are crucial for comparative genomics and phylogenetic analysis. However, multiple alignment represents a computationally difficu...
    Olaf R. P. Bininda-Emonds
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    BMCBI
    2005
    125views more  BMCBI 2005»
    Multiple sequence alignments of partially coding nucleic acid sequences
    13 years 4 months ago
    Multiple sequence alignments of partially coding nucleic acid sequences
    Download  www.bioinf.uni-leipzig.de
    Background: High quality sequence alignments of RNA and DNA sequences are an important prerequisite for the comparative analysis of genomic sequence data. Nucleic acid sequences, ...
    Roman R. Stocsits, Ivo L. Hofacker, Claudia Fried,...
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    NAR
    2000
    123views more  NAR 2000»
    Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
    13 years 4 months ago
    Update of AMmtDB: a database of multi-aligned Metazoa mitochondrial DNA sequences
    Download  cmbi.bjmu.edu.cn
    The AMmtDB database (http://bio-www.ba.cnr.it:8000/ srs6/ ) has been updated by collecting the multi-aligned sequences of Chordata mitochondrial genes coding for proteins and tRNA...
    Cecilia Lanave, Sabino Liuni, Flavio Licciulli, Ma...
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    BMCBI
    2004
    125views more  BMCBI 2004»
    A fast algorithm for determining the best combination of local alignments to a query sequence
    13 years 4 months ago
    A fast algorithm for determining the best combination of local alignments to a query sequence
    Download  www.biomedcentral.com
    Background: Existing sequence alignment algorithms assume that similarities between DNA or amino acid sequences are linearly ordered. That is, stretches of similar nucleotides or ...
    Gavin C. Conant, Andreas Wagner
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    NAR
    2006
    129views more  NAR 2006»
    AliWABA: alignment on the web through an A-Bruijn approach
    13 years 4 months ago
    AliWABA: alignment on the web through an A-Bruijn approach
    Download  www.cs.brown.edu
    Multiple sequence alignment programs are an invaluable tool in computational biology. A-Bruijn Alignment (ABA) is a method for multiple sequence alignment that represents an align...
    Neil C. Jones, Degui Zhi, Benjamin J. Raphael
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