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CONSTRAINTS
2008
182views more  CONSTRAINTS 2008»
9 years 9 months ago
Constraint Programming in Structural Bioinformatics
Bioinformatics aims at applying computer science methods to the wealth of data collected in a variety of experiments in life sciences (e.g. cell and molecular biology, biochemistry...
Pedro Barahona, Ludwig Krippahl
BMCBI
2008
158views more  BMCBI 2008»
9 years 9 months ago
Bioinformatics in Italy: BITS2007, the fourth annual meeting of the Italian Society of Bioinformatics
spectives. A total of 149 abstracts were accepted and presented in the poster session and 31 of them were selected for oral presentation. At the opening of the meeting, Roderic Gui...
Graziano Pesole, Manuela Helmer-Citterich
BMCBI
2008
88views more  BMCBI 2008»
9 years 9 months ago
Data capture in bioinformatics: requirements and experiences with Pedro
Background: The systematic capture of appropriately annotated experimental data is a prerequisite for most bioinformatics analyses. Data capture is required not only for submissio...
Daniel Jameson, Kevin L. Garwood, Christopher Garw...
BMCBI
2007
162views more  BMCBI 2007»
9 years 9 months ago
Bioclipse: an open source workbench for chemo- and bioinformatics
Background: There is a need for software applications that provide users with a complete and extensible toolkit for chemo- and bioinformatics accessible from a single workbench. C...
Ola Spjuth, Tobias Helmus, Egon L. Willighagen, St...
BIBM
2008
IEEE
125views Bioinformatics» more  BIBM 2008»
9 years 10 months ago
Systems Biology via Redescription and Ontologies (III): Protein Classification Using Malaria Parasite's Temporal Transcriptomic
This paper addresses the protein classification problem, and explores how its accuracy can be improved by using information from time-course gene expression data. The methods are ...
Antonina Mitrofanova, Samantha Kleinberg, Jane Car...
BIBE
2008
IEEE
150views Bioinformatics» more  BIBE 2008»
9 years 10 months ago
Automatic DNA microarray gridding based on Support Vector Machines
This paper presents a novel method for DNA microarray gridding based on Support Vector Machine (SVM) classifiers. It employs a set of soft-margin SVMs to estimate the lines of the ...
Dimitris G. Bariamis, Dimitris Maroulis, Dimitrios...
BIBM
2007
IEEE
133views Bioinformatics» more  BIBM 2007»
9 years 10 months ago
Mining Clinical Data with a Temporal Dimension: A Case Study
Clinical databases store large amounts of information about patients and their medical conditions. Data mining techniques can extract relationships and patterns holding in this we...
Michele Berlingerio, Francesco Bonchi, Fosca Giann...
BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
9 years 10 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
BIBE
2007
IEEE
9 years 10 months ago
Hot and Cold: Spatial Fluctuation in HIV-1 Recombination Rates
Coinfection ofa single cell with two or more HIVstrains may produce recombinant viruses upon template switching by the replication machinery. We applied a hierarchical multiple ch...
Misha L. Rajaram, Vladimir N. Minin, Marc A. Sucha...
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