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BIBM
2009
IEEE
190views Bioinformatics» more  BIBM 2009»
9 years 4 months ago
A Fast, Semi-automatic Brain Structure Segmentation Algorithm for Magnetic Resonance Imaging
Abstract--Medical image segmentation has become an essential technique in clinical and research-oriented applications. Because manual segmentation methods are tedious, and fully au...
Kevin Karsch, Qing He, Ye Duan
BIBE
2009
IEEE
135views Bioinformatics» more  BIBE 2009»
9 years 4 months ago
Vascular Tree Construction with Anatomical Realism for Retinal Images
In this paper, we present a method to automatically extract the vessel segments and construct the vascular tree with anatomical realism from a color retinal image. The significanc...
Kai-Shung Lin, Chia-Ling Tsai, Michal Sofka, Chih-...
ASWC
2009
Springer
9 years 4 months ago
SHARE: A Semantic Web Query Engine for Bioinformatics
Driven by the goal of automating data analyses in the field of bioinformatics, SHARE (Semantic Health and Research Environment) is a specialized SPARQL engine that resolves queries...
Benjamin P. Vandervalk, E. Luke McCarthy, Mark D. ...
WABI
2010
Springer
168views Bioinformatics» more  WABI 2010»
9 years 4 months ago
The Complexity of Inferring a Minimally Resolved Phylogenetic Supertree
Abstract. A recursive algorithm by Aho, Sagiv, Szymanski, and Ullman [1] forms the basis for many modern rooted supertree methods employed in Phylogenetics. However, as observed by...
Jesper Jansson, Richard S. Lemence, Andrzej Lingas
PRIB
2010
Springer
176views Bioinformatics» more  PRIB 2010»
9 years 4 months ago
An On/Off Lattice Approach to Protein Structure Prediction from Contact Maps
Abstract. An important unsolved problem in structural bioinformatics is that of protein structure prediction (PSP), the reconstruction of a biologically plausible three-dimensional...
Stefano Teso, Cristina Di Risio, Andrea Passerini,...
PRIB
2010
Springer
153views Bioinformatics» more  PRIB 2010»
9 years 4 months ago
Enhancing Graph Database Indexing by Suffix Tree Structure
Vincenzo Bonnici, Alfredo Ferro, Rosalba Giugno, A...
ISBRA
2010
Springer
9 years 4 months ago
Residue Contexts: Non-sequential Protein Structure Alignment Using Structural and Biochemical Features
The study of non-sequential alignments, with different connectivity of the aligned fragments in the proteins being compared can offer a more complete picture of the structural, evo...
Jay W. Kim, Rahul Singh
BIOCOMP
2010
9 years 4 months ago
Robust Stability Analysis and Design Under Consideration of Multiple Feedback Loops in the Tryptophan Regulatory Network of E. c
The tryptophan operon of E. coli represents an important regulatory unit consisting of multiple feedback loops. The role of these loops is crucial to understand the dynamics of tr...
Anke Meyer-Bäse, Fabian J. Theis
BIOCOMP
2010
9 years 4 months ago
A Hierarchical Decision Engine for Computer Aided Lung Nodule Detection from CT Images
- We present a novel hierarchical modular decision engine for lung nodule detection from CT images implemented by Artificial Neural Networks. The proposed Computer Aided Detection ...
Ömer M. Soysal, Jianhua Chen, Steven Bujenovi...
BIOCOMP
2010
9 years 4 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina
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