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BIBM
2008
IEEE
11 years 4 months ago
Synthetic Biology Design and Analysis: A Case Study of Frequency Entrained Biological Clock
Abstract—Biological clock, a self sustaining oscillation widely discovered in many species, is important to determine many biological activities, for example, the sleep-wake cycl...
Peng Yu, Xi Chen, David Z. Pan, Andrew D. Ellingto...
BIBE
2008
IEEE
102views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
Motifs in regulatory networks and their structural robustness
: If we consider the regulatory networks used in systems biology (especially in neural and genetic networks), we observe certain regularities in their architecture, namely the occu...
Adrien Elena, Hedi Ben Amor, N. Glade, Jacques Dem...
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng
BIBE
2008
IEEE
272views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uni...
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara
BIBE
2008
IEEE
11 years 4 months ago
VIP: Visualization of integrated proteomics data
—The post-genomic era is characterized by the rapid data accumulation leading to unwieldy and large volumes of biological data. The proteomics results (large sets of identified p...
Eugenia G. Giannopoulou, Giorgos Lepouras, Elias S...
BIBE
2008
IEEE
115views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources
—The Mouse Resource Browser MRB (http://bioit.fleming.gr/mrb) is an easy-to-use database for searching and retrieving mouse resource information. Currently, MRB hosts a list of 2...
Michael Zouberakis, C. Chandras, John M. Hancock, ...
BIBE
2008
IEEE
126views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
Polyadenylation site prediction using interesting emerging patterns
—This paper presents a study on polyadenylation site prediction in mRNA sequences. We describe a method, called PolyA-EP, that we developed for predicting polyadenylation sites a...
George Tzanis, I. Kavakiotis, Ioannis P. Vlahavas
BIBE
2008
IEEE
203views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
A study of the parameters affecting minimum detectable activity concentration level of clinical LSO PET scanners
— Recent studies in the field of molecular imaging have demonstrated the need for PET probes capable of imaging very weak activity distributions. Over this range of applications ...
Nicolas A. Karakatsanis, Konstantina S. Nikita
BIBE
2008
IEEE
160views Bioinformatics» more  BIBE 2008»
11 years 4 months ago
Parallel integration of heterogeneous genome-wide data sources
— Heterogeneous genome-wide data sources capture information on various aspects of complex biological systems. For instance, transcriptome, interactome and phenome-level informat...
Derek Greene, Kenneth Bryan, Padraig Cunningham
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