RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. Transcriptional interactions in a cell are modulated by a variety of mechanisms that prevent their representation as pure pairwise interactions between a transcription fa...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. Protein motions, ranging from molecular flexibility to largescale conformational change, play an essential role in many biochemical processes. Despite the explosion in ou...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
We have combined four different types of functional genomic data to create high coverage protein interaction networks for 11 microbes. Our integration algorithm naturally handles s...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. So far, most methods for identifying sequences under selection based on comparative sequence data have either assumed selectional pressures are the same across all branch...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Meiotic recombination is a fundamental biological event and one of the principal evolutionary forces responsible for shaping genetic variation within species. In addition to its fu...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Micro-indels are small insertion or deletion events (indels) that occur during genome evolution. The study of micro-indels is important, both in order to better understand the unde...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Permutation of class labels is a common approach to build null distributions for significance analyis of microarray data. It is assumed to produce random score distributions, which...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
The Robinson-Foulds (RF) metric is the measure most widely used in comparing phylogenetic trees; it can be computed in linear time using Day's algorithm. When faced with the n...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
It is well known that the base composition along eukaryotic genomes is long-range correlated. Here, we investigate the effect of such long-range correlations on alignment score sta...
RECOMB
2006
Springer
14 years 4 months ago
2006
Springer
Abstract. We describe and empirically evaluate machine learning methods for the prediction of zinc binding sites from protein sequences. We start by observing that a data set consi...