Sciweavers

Share
AB
2008
Springer
9 years 5 months ago
The Geometry of the Neighbor-Joining Algorithm for Small Trees
In 2007, Eickmeyer et al. showed that the tree topologies outputted by the Neighbor-Joining (NJ) algorithm and the balanced minimum evolution (BME) method for phylogenetic reconstr...
Kord Eickmeyer, Ruriko Yoshida
AB
2008
Springer
9 years 5 months ago
Differential Algebra and System Modeling in Cellular Biology
Abstract. Among all the modeling approaches dedicated to cellular biology, differential algebra is particularly related to the well-established one based on nonlinear differential ...
François Boulier, François Lemaire
AB
2008
Springer
9 years 10 months ago
An Algorithm for Qualitative Simulation of Gene Regulatory Networks with Steep Sigmoidal Response Functions
A specific class of ODEs has been shown to be adequate to describe the essential features of the complex dynamics of Gene-Regulatory Networks (GRN). But, the effective exploitatio...
Liliana Ironi, Luigi Panzeri, Erik Plahte
AB
2008
Springer
9 years 10 months ago
Algorithms for Inference, Analysis and Control of Boolean Networks
Boolean networks (BNs) are known as a mathematical model of genetic networks. In this paper, we overview algorithmic aspects of inference, analysis and control of BNs while focusin...
Tatsuya Akutsu, Morihiro Hayashida, Takeyuki Tamur...
AB
2008
Springer
9 years 10 months ago
On the Computational Power of Biochemistry
We explore the computational power of biochemistry with respect to basic chemistry, identifying complexation as the basic mechanism that distinguishes the former from the latter. W...
Luca Cardelli, Gianluigi Zavattaro
AB
2008
Springer
9 years 10 months ago
The Smallest Multistationary Mass-Preserving Chemical Reaction Network
Biochemical models that exhibit bistability are of interest to biologists and mathematicians alike. Chemical reaction network theory can provide sufficient conditions for the exist...
Anne Shiu
AB
2008
Springer
9 years 10 months ago
Local Structure and Behavior of Boolean Bioregulatory Networks
Abstract. A well-known discrete approach to modeling biological regulatory networks is the logical framework developed by R. Thomas. The network structure is captured in an interac...
Heike Siebert
books