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ALMOB
2007
133views more  ALMOB 2007»
10 years 1 months ago
Characteristics of predictor sets found using differential prioritization
Background: Feature selection plays an undeniably important role in classification problems involving high dimensional datasets such as microarray datasets. For filter-based featu...
Chia Huey Ooi, Madhu Chetty, Shyh Wei Teng
ALMOB
2007
170views more  ALMOB 2007»
10 years 1 months ago
A spatio-temporal mining approach towards summarizing and analyzing protein folding trajectories
Understanding the protein folding mechanism remains a grand challenge in structural biology. In the past several years, computational theories in molecular dynamics have been empl...
Hui Yang, Srinivasan Parthasarathy, Duygu Ucar
ALMOB
2007
151views more  ALMOB 2007»
10 years 1 months ago
Local sequence alignments statistics: deviations from Gumbel statistics in the rare-event tail
Background: The optimal score for ungapped local alignments of infinitely long random sequences is known to follow a Gumbel extreme value distribution. Less is known about the imp...
Stefan Wolfsheimer, Bernd Burghardt, Alexander K. ...
ALMOB
2007
69views more  ALMOB 2007»
10 years 1 months ago
A basic analysis toolkit for biological sequences
Raffaele Giancarlo, Alessandro Siragusa, Enrico Si...
ALMOB
2007
52views more  ALMOB 2007»
10 years 1 months ago
Mapping sequences by parts
Gilles Didier, Carito Guziolowski
ALMOB
2007
111views more  ALMOB 2007»
10 years 1 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
ALMOB
2007
129views more  ALMOB 2007»
10 years 1 months ago
Consistency of the Neighbor-Net Algorithm
Background: Neighbor-Net is a novel method for phylogenetic analysis that is currently being widely used in areas such as virology, bacteriology, and plant evolution. Given an inp...
David Bryant, Vincent Moulton, Andreas Spillner
ALMOB
2007
155views more  ALMOB 2007»
10 years 1 months ago
Finding coevolving amino acid residues using row and column weighting of mutual information and multi-dimensional amino acid rep
Background: Some amino acid residues functionally interact with each other. This interaction will result in an evolutionary co-variation between these residues – coevolution. Ou...
Rodrigo Gouveia-Oliveira, Anders Gorm Pedersen
ALMOB
2007
73views more  ALMOB 2007»
10 years 1 months ago
GOGOT: a method for the identification of differentially expressed fragments from cDNA-AFLP data
Background: One-dimensional (1-D) electrophoretic data obtained using the cDNA-AFLP method have attracted great interest for the identification of differentially expressed transcr...
Koji Kadota, Ryoko Araki, Yuji Nakai, Masumi Abe
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