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BMCBI
2008
84views more  BMCBI 2008»
13 years 3 months ago
The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem
Background: This paper discusses the problem of automated annotation. It is a continuation of the previous work on the A4-algorithm (Adaptive algorithm of automated annotation) de...
Andrey M. Leontovich, Konstantin Y. Tokmachev, Han...
BMCBI
2007
175views more  BMCBI 2007»
13 years 3 months ago
Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation
Background: Apollo, a genome annotation viewer and editor, has become a widely used genome annotation and visualization tool for distributed genome annotation projects. When using...
Kathrin Klee, Rebecca Ernst, Manuel Spannagl, Klau...
BMCBI
2007
167views more  BMCBI 2007»
13 years 3 months ago
Applying negative rule mining to improve genome annotation
Background: Unsupervised annotation of proteins by software pipelines suffers from very high error rates. Spurious functional assignments are usually caused by unwarranted homolog...
Irena I. Artamonova, Goar Frishman, Dmitrij Frishm...
BMCBI
2008
109views more  BMCBI 2008»
13 years 3 months ago
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
Background: Transposable elements are abundant in eukaryotic genomes and it is believed that they have a significant impact on the evolution of gene and chromosome structure. Whil...
David Ellinghaus, Stefan Kurtz, Ute Willhoeft
BMCBI
2008
121views more  BMCBI 2008»
13 years 3 months ago
BioSAVE: Display of scored annotation within a sequence context
Background: Visualization of sequence annotation is a common feature in many bioinformatics tools. For many applications it is desirable to restrict the display of such annotation...
Richard F. Pollock, Boris Adryan
BMCBI
2010
112views more  BMCBI 2010»
13 years 3 months ago
TabSQL: a MySQL tool to facilitate mapping user data to public databases
Background: With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public...
Xiaoqin Xia, Michael McClelland, Yipeng Wang
BMCBI
2010
139views more  BMCBI 2010»
13 years 3 months ago
PoGO: Prediction of Gene Ontology terms for fungal proteins
Background: Automated protein function prediction methods are the only practical approach for assigning functions to genes obtained from model organisms. Many of the previously re...
Jaehee Jung, Gangman Yi, Serenella A. Sukno, Micha...
BMCBI
2010
153views more  BMCBI 2010»
13 years 3 months ago
MimoSA: a system for minimotif annotation
Background: Minimotifs are short peptide sequences within one protein, which are recognized by other proteins or molecules. While there are now several minimotif databases, they a...
Jay Vyas, Ronald J. Nowling, Thomas Meusburger, Da...
ICASSP
2010
IEEE
13 years 3 months ago
Supervised topic model for automatic image annotation
This paper presents a new probabilistic model for the task of image annotation. Our model, which we call sLDA-bin, extends supervised Latent Dirichlet Allocation (sLDA) model to h...
Duangmanee Putthividhya, Hagai Thomas Attias, Srik...
CVPR
2010
IEEE
13 years 3 months ago
Topic regression multi-modal Latent Dirichlet Allocation for image annotation
We present topic-regression multi-modal Latent Dirichlet Allocation (tr-mmLDA), a novel statistical topic model for the task of image and video annotation. At the heart of our new...
Duangmanee Putthividhya, Hagai Thomas Attias, Srik...