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APBC
2004
13 years 5 months ago
Classification Comparison of Prediction of Solvent Accessibility From Protein Sequences
Huiling Chen, Huan-Xiang Zhou, Xiaohua Hu, Illhoi ...
APBC
2004
122views Bioinformatics» more  APBC 2004»
13 years 5 months ago
Integrating Biopathway Databases for Large-scale Modeling and Simulation
Biopathway databases have been developed, such as KEGG and EcoCyc, that compile interaction structures of biopathways together with biological annotations. However, these biopathw...
Masao Nagasaki, Atsushi Doi, Hiroshi Matsuno, Sato...
APBC
2004
122views Bioinformatics» more  APBC 2004»
13 years 5 months ago
Evolution of Relative Synonymous Codon Usage in Human Immunodeficiency Virus Type 1
Mutation in HIV-1 is extremely rapid, a consequence of a low-fidelity viral reverse transcription process. The envelope gene has been shown to accumulate substitutions at a rate o...
Peter L. Meintjes, Allen G. Rodrigo
APBC
2004
13 years 5 months ago
Variable-length Intervals in Homology Search
Fast, accurate, and scalable search techniques for homology searching of large genomic collections are becoming an increasingly important requirement as genomic sequence collectio...
Abhijit Chattaraj, Hugh E. Williams
APBC
2004
132views Bioinformatics» more  APBC 2004»
13 years 5 months ago
Identifying Character Non-Independence in Phylogenetic Data Using Data Mining Techniques
Undiscovered relationships in a data set may confound analyses, particularly those that assume data independence. Such problems occur when characters used for phylogenetic analyse...
Anne M. Maglia, Jennifer L. Leopold, Venkat Ram Gh...
APBC
2004
154views Bioinformatics» more  APBC 2004»
13 years 5 months ago
Dispensation Order Generation for Pyrosequencing
This article describes a dispensation order generation algorithm for genotyping using the Pyrosequencing method. The input template of the algorithm is a slightly restricted regul...
Mats Carlsson, Nicolas Beldiceanu
APBC
2004
13 years 5 months ago
Filtering of Ineffective siRNAs and Improved siRNA Design Tool
Prudence W. H. Wong, Tak Wah Lam, Y. C. Mui, Siu-M...
APBC
2004
164views Bioinformatics» more  APBC 2004»
13 years 5 months ago
Cluster Ensemble and Its Applications in Gene Expression Analysis
Huge amount of gene expression data have been generated as a result of the human genomic project. Clustering has been used extensively in mining these gene expression data to find...
Xiaohua Hu, Illhoi Yoo
APBC
2004
13 years 5 months ago
Recognition Sequences in the Restriction Endonucleases
The nature of specific protein-nucleic acid interaction between restriction endonucleases (RE) and their recognition sequences (RS) was studied by bioinformatics methods. It was f...
Jan C. Biro, Josephine M. K. Biro