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NAR
2000
121views more  NAR 2000»
13 years 4 months ago
Database of non-canonical base pairs found in known RNA structures
Atomic resolution RNA structures are being published at an increasing rate. It is common to find a modest number of non-canonical base pairs in these structures in addition to the...
Uma Nagaswamy, Neil Voss, Zhengdong Zhang, George ...
SP
2008
IEEE
122views Security Privacy» more  SP 2008»
13 years 4 months ago
Large-scale phylogenetic analysis on current HPC architectures
Abstract. Phylogenetic inference is considered a grand challenge in Bioinformatics due to its immense computational requirements. The increasing popularity and availability of larg...
Michael Ott, Jaroslaw Zola, Srinivas Aluru, Andrew...
JCB
2006
126views more  JCB 2006»
13 years 4 months ago
Combinatorics of Saturated Secondary Structures of RNA
Following Zuker (1986), a saturated secondary structure for a given RNA sequence is a secondary structure such that no base pair can be added without violating the definition of s...
P. Clote
DNA
2009
Springer
185views Bioinformatics» more  DNA 2009»
13 years 11 months ago
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots
Knowledge of energy barriers between pairs of secondary structures for a given DNA or RNA molecule is useful, both in understanding RNA function in biological settings and in desig...
Ján Manuch, Chris Thachuk, Ladislav Stacho,...