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BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
8 years 5 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
BIBE
2007
IEEE
8 years 5 months ago
Hot and Cold: Spatial Fluctuation in HIV-1 Recombination Rates
Coinfection ofa single cell with two or more HIVstrains may produce recombinant viruses upon template switching by the replication machinery. We applied a hierarchical multiple ch...
Misha L. Rajaram, Vladimir N. Minin, Marc A. Sucha...
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
8 years 7 months ago
FPGA Acceleration of Phylogeny Reconstruction for Whole Genome Data
In this paper we describe our design and characterization of a co-processor architecture to accelerate median-based phylogenetic reconstruction for generearrangement data. Our curr...
Jason D. Bakos, Panormitis E. Elenis, Jijun Tang
BIBE
2007
IEEE
126views Bioinformatics» more  BIBE 2007»
8 years 7 months ago
An End-to-End Process for Cancer Identification from Images of Lung Tissue
— This research describes a non-interactive process that applies several forms of computational intelligence to the task of classifying biopsy lung tissue samples based on visual...
Walker H. Land Jr., Daniel W. McKee, Tatyana Zhuko...
BIBE
2007
IEEE
151views Bioinformatics» more  BIBE 2007»
8 years 7 months ago
On the Effectiveness of Constraints Sets in Clustering Genes
—In this paper, we have modified a constrained clustering algorithm to perform exploratory analysis on gene expression data using prior knowledge presented in the form of constr...
Erliang Zeng, Chengyong Yang, Tao Li, Giri Narasim...
BIBE
2007
IEEE
136views Bioinformatics» more  BIBE 2007»
8 years 7 months ago
A Two-Stage Gene Selection Algorithm by Combining ReliefF and mRMR
Abstract—Gene expression data usually contains a large number of genes, but a small number of samples. Feature selection for gene expression data aims at finding a set of genes ...
Yi Zhang, Chris H. Q. Ding, Tao Li
BIBE
2007
IEEE
153views Bioinformatics» more  BIBE 2007»
8 years 7 months ago
Combined expression data with missing values and gene interaction network analysis: a Markovian integrated approach
—DNA microarray technologies provide means for monitoring in the order of tens of thousands of gene expression levels quantitatively and simultaneously. However data generated in...
Juliette Blanchet, Matthieu Vignes
BIBE
2007
IEEE
122views Bioinformatics» more  BIBE 2007»
8 years 9 months ago
A PQRM-based PACS System for Advanced Medical Services under Grid Environment
Yong-Jie Ni, Chan-Hyun Youn, Byoung-Jin Kim, Young...
BIBE
2007
IEEE
167views Bioinformatics» more  BIBE 2007»
8 years 9 months ago
Assessing the Performance of Macromolecular Sequence Classifiers
Machine learning approaches offer some of the most cost-effective approaches to building predictive models (e.g., classifiers) in a broad range of applications in computational bio...
Cornelia Caragea, Jivko Sinapov, Vasant Honavar, D...
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