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BIBE
2007
IEEE
121views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
Identifying Genomic Regulators of Set-Wise Co-Expression
The genetical genomics approach has been used to study the genetic basis of variation in gene expression, where putative transcriptional regulators of genes are identified via gene...
Jung Hoon Woo, Tian Zheng, Ju Han Kim
BIBE
2007
IEEE
108views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
GPX: A Tool for the Exploration and Visualization of Genome Evolution
Neha Nahar, Lutz Hamel, Maria S. Poptsova, J. Pete...
BIBE
2007
IEEE
162views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine Learning
— The prognosis for many cancers could be improved dramatically if they could be detected while still at the microscopic disease stage. We are investigating the possibility of de...
Mary Qu Yang, Jack Y. Yang
BIBE
2007
IEEE
169views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
Combining Semantics, Context, and Statistical Evidence in Genomics Literature Search
—We present an information retrieval model for combining evidence from concept-based semantics, term statistics, and context for improving search precision of genomics literature...
Jay Urbain, Nazli Goharian, Ophir Frieder
BIBE
2007
IEEE
145views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
Homomorphisms of Multisource Trees into Networks with Applications to Metabolic Pathways
Network mapping is a convenient tool for comparing and exploring biological networks; it can be used for predicting unknown pathways, fast and meaningful searching of databases, a...
Qiong Cheng, Robert W. Harrison, Alexander Zelikov...
BIBE
2007
IEEE
128views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
QOMA2: Optimizing the alignment of many sequences
Abstract—We consider the problem of aligning multiple protein sequences with the goal of maximizing the SP (Sum-of-Pairs) score, when the number of sequences is large. The QOMA (...
Xu Zhang, Tamer Kahveci
BIBE
2007
IEEE
150views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
Differential Scoring for Systolic Sequence Alignment
Systolic implementations of dynamic programming solutions that utilize a similarity matrix can achieve appreciable performance with both course- and fine-grain parallelization. A ...
Antonio E. de la Serna
BIBE
2007
IEEE
133views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
Denoising of Array-Based DNA Copy Number Data Using The Dual-tree Complex Wavelet Transform
—Array-based comparative genomic hybridization (array CGH) is a highly efficient technique, allowing the simultaneous measurement of genomic DNA copy number at hundreds or thous...
Nha Nguyen, Heng Huang, Soontorn Oraintara, Yuhang...
BIBE
2007
IEEE
138views Bioinformatics» more  BIBE 2007»
13 years 10 months ago
A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including Pseudoknots
-We demonstrate a new algorithm named FlexStem to predict RNA secondary structures with pseudoknots. Our approach is based on the free energy minimization criterion, and utilizes a...
Xiang Chen, Simin He, Dongbo Bu, Runsheng Chen, We...