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BIBE
2008
IEEE
272views Bioinformatics» more  BIBE 2008»
10 years 11 months ago
Design and implementation of the Smith-Waterman algorithm on the CUDA-compatible GPU
— This paper describes a design and implementation of the Smith-Waterman algorithm accelerated on the graphics processing unit (GPU). Our method is implemented using compute uni...
Yuma Munekawa, Fumihiko Ino, Kenichi Hagihara
BIBE
2008
IEEE
10 years 11 months ago
VIP: Visualization of integrated proteomics data
—The post-genomic era is characterized by the rapid data accumulation leading to unwieldy and large volumes of biological data. The proteomics results (large sets of identified p...
Eugenia G. Giannopoulou, Giorgos Lepouras, Elias S...
BIBE
2008
IEEE
115views Bioinformatics» more  BIBE 2008»
10 years 11 months ago
The Mouse Resource Browser (MRB) - A near-complete registry of mouse resources
—The Mouse Resource Browser MRB (http://bioit.fleming.gr/mrb) is an easy-to-use database for searching and retrieving mouse resource information. Currently, MRB hosts a list of 2...
Michael Zouberakis, C. Chandras, John M. Hancock, ...
BIBE
2008
IEEE
126views Bioinformatics» more  BIBE 2008»
10 years 11 months ago
Polyadenylation site prediction using interesting emerging patterns
—This paper presents a study on polyadenylation site prediction in mRNA sequences. We describe a method, called PolyA-EP, that we developed for predicting polyadenylation sites a...
George Tzanis, I. Kavakiotis, Ioannis P. Vlahavas
BIBE
2008
IEEE
203views Bioinformatics» more  BIBE 2008»
10 years 11 months ago
A study of the parameters affecting minimum detectable activity concentration level of clinical LSO PET scanners
— Recent studies in the field of molecular imaging have demonstrated the need for PET probes capable of imaging very weak activity distributions. Over this range of applications ...
Nicolas A. Karakatsanis, Konstantina S. Nikita
BIBE
2008
IEEE
160views Bioinformatics» more  BIBE 2008»
10 years 11 months ago
Parallel integration of heterogeneous genome-wide data sources
— Heterogeneous genome-wide data sources capture information on various aspects of complex biological systems. For instance, transcriptome, interactome and phenome-level informat...
Derek Greene, Kenneth Bryan, Padraig Cunningham
BIBE
2008
IEEE
10 years 11 months ago
Towards dynamic database infrastructures for mouse genetics
Morris A. Swertz, Damian Smedley, Katy Wolstencrof...
BIBE
2008
IEEE
10 years 11 months ago
Robust parameter identification for biological circuit calibration
Abstract-The aim of this work is to compare some deterministic optimization algorithms and evolutionary algorithms on parameter estimation in a biological circuit design problem: t...
Giuseppe Nicosia, Eva Sciacca
BIBE
2008
IEEE
100views Bioinformatics» more  BIBE 2008»
10 years 11 months ago
Flexible data integration and ontology-based data access to medical records
— The ASSIST project aims to facilitate cervical cancer research by integrating medical records containing both phenotypic and genotypic data, and residing in different medical c...
Lucas Zamboulis, Alexandra Poulovassilis, George R...
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