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ISB
2002
112views more  ISB 2002»
13 years 4 months ago
High quality visualization of biochemical pathways in BioPath
ABSTRACT: Biochemical reactions form large and complex networks. Comprehensible visual representations of these networks help biochemists understand the relationships between the c...
Falk Schreiber
FPGA
2004
ACM
174views FPGA» more  FPGA 2004»
13 years 10 months ago
A compiled accelerator for biological cell signaling simulations
The simulation of large systems of biochemical reactions is a key part of research into molecular signaling and information processing in biological cells. However, it can be impr...
John F. Keane, Christopher Bradley, Carl Ebeling
CMSB
2007
Springer
13 years 10 months ago
Reconstructing Metabolic Pathways by Bidirectional Chemical Search
Abstract. One of the main challenges in systems biology is the establishment of the metabolome: a catalogue of the metabolites and biochemical reactions present in a specific orga...
Liliana Félix, Francesc Rosselló, Ga...
MEMBRANE
2009
Springer
13 years 11 months ago
Computational Nature of Processes Induced by Biochemical Reactions
evel of abstraction that we adopt, the functioning of a biochemical reaction is based on facilitation and inhibition: a reaction can take place if all of its reactants are present ...
Andrzej Ehrenfeucht, Grzegorz Rozenberg