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BIOCOMP
2009
9 years 11 months ago
Analysis of Long Branch Extraction
Long branch attraction is a problem that afflicts phylogenetic methods and a procedure to detect a data set suffering from this problem is the long branch extraction method[1]. Thi...
Timothy O'Connor, Kenneth Sundberg, Hyrum Carroll,...
BIOCOMP
2009
9 years 11 months ago
Fast Algorithms for Computing the Constrained LCS of Run-Length Encoded Strings
Hsing-Yen Ann, Chang-Biau Yang, Chiou-Ting Tseng, ...
BIOCOMP
2009
9 years 11 months ago
Consensus RNA Secondary Structure Prediction by Ranking k-Length Stems
The accurate computational prediction of RNA secondary structures is a difficult task, but an important one, since RNA structure is usually more evolutionarily conserved than prima...
Denise Y. F. Mak, Gary Benson
BIOCOMP
2009
9 years 11 months ago
Evolution of Domain Compositions in the Metabolic Networks of Human and Escherichia Coli
It is widely recognized that complexity of metabolic networks arises from duplication, recruitment and recombination of enzyme protein domains. However, variations of the domain ev...
Chen-Hsiang Yeang, Nils Baas
BIOCOMP
2009
9 years 11 months ago
GEFERENCE: Reference Database for Construing Personal Genome Expression
- With the lowering cost and the increasing discoveries, genomics research filed has materialized personal genome era. Especially, microarray gene expression platform has already m...
Changwon Keum, Ju Han Kim, Young Soo Song, Kyoung ...
BIOCOMP
2009
9 years 11 months ago
Evidence against the Paradigm of Energy Minimization in Protein Design
Abstract-- Stating protein design as an energy minimization in the space of amino acid sequences and rotamer combinations is usual. In the current paper an evolutionary algorithm b...
Andrea Bazzoli, Andrea Tettamanzi
BIOCOMP
2009
9 years 11 months ago
Monitoring Influenza Trends through Mining Social Media
Analysis of Google Influenza-like-illness (ILI) search queries has shown a strongly correlated pattern with Center for Disease Control and Prevention seasonal ILI reporting data. W...
Courtney Corley, Armin R. Mikler, Karan P. Singh, ...
BIOCOMP
2009
9 years 11 months ago
Improving Remote Homology Detection Using Sequence Properties and Position Specific Scoring Matrices
Current biological sequence comparison tools frequently fail to recognize matches between homologs when sequence similarity is below the twilight zone of less than 25% sequence id...
Gina Cooper, Michael L. Raymer
BIOCOMP
2009
9 years 11 months ago
Inferring Gene Regulatory Networks from Asynchronous Microarray Data
Modern approaches to treating genetic disorders, cancers and even epidemics rely on a detailed understanding of the underlying gene signaling network. Previous work has used time s...
David Oviatt, Mark J. Clement, Quinn Snell, Kennet...
BIOCOMP
2008
9 years 11 months ago
Improved Segmentation Based on Probabilistic Labeling
⎯This paper presents an improved multi-object segmentation algorithm based on probabilistic labeling. First, a critical look is focused on utilizing vector calculus operator and ...
Kai-Chieh Yang, Ming-Chi Jhuang, Chun-Shun Tseng, ...
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