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BIOCOMP
2006
10 years 1 months ago
Improving the Efficiency of Sorting by Reversals
Sorting signed permutations by reversals is a fundamental problem in computationial molecular biology. In this paper we present an improved algorithm for sorting by reversals. Our...
Yijie Han
BIOCOMP
2006
10 years 1 months ago
Basic Reproductive Rate of a Spatial Epidemic Seir Model using Computer Algebra Software
The use of computer algebra software has many applications in diverse fields like epidemiology. This work pretends to show how computer algebra software applications for symbolic ...
Sebastian Guzmán, Juan Fernando Ospina
BIOCOMP
2006
10 years 1 months ago
WebDock: A Structure-Based Drug Discovery Web Service
High-Throughput Docking has emerged as a well establish method for identifying lead components in the process of searching for new drugs. The High-Throughput Docking Service provi...
Joseph Gill, Legand L. Burge III, Zengjian Hu, Wil...
BIOCOMP
2006
10 years 1 months ago
Combined QM/MM Studies of Binding Effect of Cytochrome P450cam to Putidaredoxin
Abstract - Combined QM/MM calculations of an activesite of Cytochrome P450cam have been performed, before and after a binding process of Cytochrome P450cam to Putidaredoxin. The ca...
Marek Freindorf, Yihan Shao, Jing Kong, Thomas R. ...
BIOCOMP
2006
10 years 1 months ago
Identification of Intrinsically Unstructured Regions in Proteins Using Primary Structure
Most proteins function only when folded into a particular 3D configuration. Recently, a class of proteins has been discovered that do not fold into any particular configuration; t...
Mary Qu Yang, Jack Y. Yang
BIOCOMP
2006
10 years 1 months ago
Filtering Tandem Repeats in DNA Sequences
A tandem repeat is a sequence of two or more contiguous, approximate copies of a pattern. Tandem repeats occur in the genomes of both eukaryotic and prokaryotic organisms. They ar...
Dina Sokol, Justin Tojeira
BIOCOMP
2006
10 years 1 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
BIOCOMP
2006
10 years 1 months ago
Theoretical Bounds for the Number of Inferable Edges in Sparse Random Networks
Abstract-- The inference of a network structure from experimental data providing dynamical information about the underlying system of investigation is an important and still outsta...
Frank Emmert-Streib, Matthias Dehmer
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