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    BIOINFORMATICS
    2011
    157views Artificial Intelligence» more  BIOINFORMATICS 2011»
    libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
    12 years 8 months ago
    libfbi: a C++ implementation for fast box intersection and application to sparse mass spectrometry data
    Download  linuxco.de
    Abstract. This document is a preprint of the following publication: Bioinformatics (2011) 27(8): 1166-1167. Algorithms for sparse data require fast search and subset selection capa...
    Marc Kirchner, Buote Xu, Hanno Steen, Judith A. J....
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    BIOINFORMATICS
    2011
    201views Artificial Intelligence» more  BIOINFORMATICS 2011»
    STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB
    12 years 8 months ago
    STOCHSIMGPU: parallel stochastic simulation for the Systems Biology Toolbox 2 for MATLAB
    Download  people.maths.ox.ac.uk
    Guido Klingbeil, Radek Erban, Mike Giles, Philip K...
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    BIOINFORMATICS
    2011
    190views Artificial Intelligence» more  BIOINFORMATICS 2011»
    A Ruby API to query the Ensembl database for genomic features
    12 years 8 months ago
    A Ruby API to query the Ensembl database for genomic features
    Download  www.mendeley.com
    Francesco Strozzi, Jan Aerts
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    BIOINFORMATICS
    2011
    144views Artificial Intelligence» more  BIOINFORMATICS 2011»
    FIMO: scanning for occurrences of a given motif
    12 years 8 months ago
    FIMO: scanning for occurrences of a given motif
    Download  bioinformatics.oxfordjournals.org
    Charles E. Grant, Timothy L. Bailey, William Staff...
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    BIOINFORMATICS
    2011
    191views Artificial Intelligence» more  BIOINFORMATICS 2011»
    A pipeline for RNA-seq data processing and quality assessment
    12 years 8 months ago
    A pipeline for RNA-seq data processing and quality assessment
    Download  bioinformatics.oxfordjournals.org
    Angela Goncalves, Andrew Tikhonov, Alvis Brazma, M...
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    BIOINFORMATICS
    2011
    197views Artificial Intelligence» more  BIOINFORMATICS 2011»
    BayesPeak - an R package for analysing ChIP-seq data
    12 years 8 months ago
    BayesPeak - an R package for analysing ChIP-seq data
    Download  www.cmb.usc.edu
    Jonathan M. Cairns, Christiana Spyrou, Rory Stark,...
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    BIOINFORMATICS
    2011
    199views Artificial Intelligence» more  BIOINFORMATICS 2011»
    When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
    12 years 8 months ago
    When the Web meets the cell: using personalized PageRank for analyzing protein interaction networks
    Download  bolyai.cs.elte.hu
    Motivation: Enormous, and constantly increasing quantity of biological information is represented in protein interaction network databases. Most of these data are freely accessibl...
    Gábor Iván, Vince Grolmusz
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    BIOINFORMATICS
    2011
    197views Artificial Intelligence» more  BIOINFORMATICS 2011»
    All-atom knowledge-based potential for RNA structure prediction and assessment
    12 years 11 months ago
    All-atom knowledge-based potential for RNA structure prediction and assessment
    Download  sgu.bioinfo.cipf.es
    Motivation: Over the recent years, the vision that RNA simply serves as information transfer molecule has dramatically changed. The study of the sequence/structure/function relati...
    Emidio Capriotti, Tomás Norambuena, Marc A....
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    BIOINFORMATICS
    2011
    183views Artificial Intelligence» more  BIOINFORMATICS 2011»
    MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks
    12 years 11 months ago
    MTR: taxonomic annotation of short metagenomic reads using clustering at multiple taxonomic ranks
    Download  dare.ubn.kun.nl
    Fabio Gori, Gianluigi Folino, Mike S. M. Jetten, E...
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    BIOINFORMATICS
    2011
    218views Artificial Intelligence» more  BIOINFORMATICS 2011»
    RNA-RNA interaction prediction based on multiple sequence alignments
    12 years 11 months ago
    RNA-RNA interaction prediction based on multiple sequence alignments
    Download  www.ncrna.org
    Andrew X. Li, Manja Marz, Jing Qin, Christian M. R...
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