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BIB
2002
135views more  BIB 2002»
12 years 1 months ago
Pise: Software for Building Bioinformatics Webs
Pise is interface construction software for bioinformatics applications that run by commandline operations. It creates common, easy to use interfaces to these for the Web, or othe...
Don Gilbert
SIGARCH
2008
144views more  SIGARCH 2008»
12 years 1 months ago
A stream chip-multiprocessor for bioinformatics
- Bioinformatics applications such as gene and protein sequence matching algorithms are characterized by the need to process large amounts of data. While uni-processor performance ...
Ravi Kiran Karanam, Arun Ravindran, Arindam Mukher...
GRID
2006
Springer
12 years 1 months ago
Grid Deployment of Legacy Bioinformatics Applications with Transparent Data Access
Although grid computing offers great potential for executing large-scale bioinformatics applications, practical deployment is constrained by legacy interfaces. Most widely deployed...
Christophe Blanchet, Rémi Mollon, Douglas T...
BMCBI
2006
116views more  BMCBI 2006»
12 years 1 months ago
HotSwap for bioinformatics: A STRAP tutorial
Background: Bioinformatics applications are now routinely used to analyze large amounts of data. Application development often requires many cycles of optimization, compiling, and...
Christoph Gille, Peter N. Robinson
CONSTRAINTS
2008
182views more  CONSTRAINTS 2008»
12 years 1 months ago
Constraint Programming in Structural Bioinformatics
Bioinformatics aims at applying computer science methods to the wealth of data collected in a variety of experiments in life sciences (e.g. cell and molecular biology, biochemistry...
Pedro Barahona, Ludwig Krippahl
BMCBI
2008
111views more  BMCBI 2008»
12 years 1 months ago
CBESW: Sequence Alignment on the Playstation 3
Background: The exponential growth of available biological data has caused bioinformatics to be rapidly moving towards a data-intensive, computational science. As a result, the co...
Adrianto Wirawan, Chee Keong Kwoh, Nim Tri Hieu, B...
ISCAPDCS
2007
12 years 3 months ago
Architectural requirements of parallel computational biology applications with explicit instruction level parallelism
—The tremendous growth in the information culture, efficient digital searches are needed to extract and identify information from huge data. The notion that evolution in silicon ...
Naeem Zafar Azeemi
CIKM
2003
Springer
12 years 7 months ago
HyperThesis: the gRNA spell on the curse of bioinformatics applications integration
In this paper, we describe a graphical workflow management system called HyperThesis to address the challenges of integrating bioinformatics applications. HyperThesis is an integ...
Sourav S. Bhowmick, Vivek Vedagiri, Amey V. Laud
ISPASS
2005
IEEE
12 years 7 months ago
BioBench: A Benchmark Suite of Bioinformatics Applications
Recent advances in bioinformatics and the significant increase in computational power available to researchers have made it possible to make better use of the vast amounts of gene...
Kursad Albayraktaroglu, Aamer Jaleel, Xue Wu, Mano...
IPPS
2005
IEEE
12 years 7 months ago
Bioinformatics on a Heterogeneous Java Distributed System
A programmable Java distributed system, which utilises the free resources of a heterogeneous set of computers linked together by a network, has been developed. The system has been...
Andrew J. Page, Thomas M. Keane, Thomas J. Naughto...
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