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BIRTHDAY
2010
Springer
9 years 9 months ago
Some Thoughts on the Semantics of Biocharts
Abstract. This paper combines three topics to which Amir Pnueli contributed significantly: the semantics of languages for concurrency, the semantics of statecharts, and reactive an...
David Harel, Hillel Kugler
ICTAI
2010
IEEE
9 years 9 months ago
The BioASP Library: ASP Solutions for Systems Biology
Abstract--Today's molecular biology is confronted with enormous amounts of data, generated by new high-throughput technologies, along with an increasing number of biological m...
Martin Gebser, Arne König, Torsten Schaub, Sv...
KES
2010
Springer
9 years 10 months ago
Talking Biology in Logic, and Back
While computation of biological information takes center stage in today’s research, knowledge-based query processing in biological databases has not gained much attention. The co...
Hasan Jamil
SCFBM
2008
151views more  SCFBM 2008»
9 years 11 months ago
Wndchrm - an open source utility for biological image analysis
Background: Biological imaging is an emerging field, covering a wide range of applications in biological and clinical research. However, while machinery for automated experimentin...
Lior Shamir, Nikita Orlov, D. Mark Eckley, Tomasz ...
JBI
2002
128views Bioinformatics» more  JBI 2002»
9 years 11 months ago
Rutabaga by any other name: extracting biological names
i As the pace of biological research accelerates, biologists are becoming increasingly reliant on computers to manage the information explosion. Biologists communicate their resea...
Lynette Hirschman, Alexander A. Morgan, Alexander ...
ALIFE
2004
9 years 11 months ago
Autopoiesis and Natural Drift: Genetic Information, Reproduction, and Evolution Revisited
The contribution of the theory of autopoiesis to the definition of life and biological theory affirms biological autonomy as a central notion of scientific and philosophical inquir...
Arantza Etxeberria
JSW
2007
191views more  JSW 2007»
9 years 11 months ago
Building Self-Configuring Data Centers with Cross Layer Coevolution
Abstract—This paper describes a biologically-inspired architecture, called SymbioticSphere, which allows data centers to autonomously adapt to dynamic environmental changes. Symb...
Paskorn Champrasert, Junichi Suzuki
JBI
2006
107views Bioinformatics» more  JBI 2006»
9 years 11 months ago
Knowledge guided analysis of microarray data
To microarray expression data analysis, it is well accepted that biological knowledge-guided clustering techniques show more advantages than pure mathematical techniques. In this ...
Zhuo Fang, Jiong Yang, Yixue Li, Qing-ming Luo, Le...
JMLR
2008
127views more  JMLR 2008»
9 years 11 months ago
Incremental Identification of Qualitative Models of Biological Systems using Inductive Logic Programming
The use of computational models is increasingly expected to play an important role in predicting the behaviour of biological systems. Models are being sought at different scales o...
Ashwin Srinivasan, Ross D. King
JCIT
2008
108views more  JCIT 2008»
9 years 11 months ago
Data Mining for Genetics: A Genetic Algorithm Approach
MINING biological data is an emerging area of intersection between data mining and bioinformatics. Bio-informaticians have been working on the research and development of computat...
G. Madhu, Keshava Reddy
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