Sciweavers

CSB
2004
IEEE
13 years 8 months ago
Navigating through the Biological Maze
Advances in genome science have created a surge of data. These data critical to scientific discovery are made available in thousands of heterogeneous public resources. Each of the...
Zoé Lacroix, Kaushal Parekh, Louiqa Raschid...
SSDBM
2003
IEEE
123views Database» more  SSDBM 2003»
13 years 9 months ago
MoBIoS: A Metric-Space DBMS to Support Biological Discovery
MoBIoS is a specialized database management system whose storage manager is based on metric-space indexing, and whose query language entails biological data types. When relational...
Daniel P. Miranker, Weijia Xu, Rui Mao
IDA
2005
Springer
13 years 9 months ago
Biological Cluster Validity Indices Based on the Gene Ontology
With the invention of biotechnological high throughput methods like DNA microarrays and the analysis of the resulting huge amounts of biological data, clustering algorithms gain ne...
Nora Speer, Christian Spieth, Andreas Zell
DILS
2005
Springer
13 years 9 months ago
Cluster Based Integration of Heterogeneous Biological Databases Using the AutoMed Toolkit
This paper presents an extensible architecture that can be used to support the integration of heterogeneous biological data sets. In our architecture, a clustering approach has bee...
Michael Maibaum, Lucas Zamboulis, Galia Rimon, Chr...
CIBCB
2005
IEEE
13 years 10 months ago
Functional Distances for Genes Based on GO Feature Maps and their Application to Clustering
— With the invention of high throughput methods, researchers are capable of producing large amounts of biological data. During the analysis of such data, the need for a functiona...
Nora Speer, Holger Fröhlich, Christian Spieth...
SSDBM
2007
IEEE
124views Database» more  SSDBM 2007»
13 years 10 months ago
Incorporating Uncertainty Metrics into a General-Purpose Data Integration System
There is a significant need for data integration capabilities in the scientific domain, which has manifested itself as products in the commercial world as well as academia. Howeve...
Brenton Louie, Landon Detwiler, Nilesh N. Dalvi, R...
DASFAA
2007
IEEE
183views Database» more  DASFAA 2007»
13 years 10 months ago
BioDIFF: An Effective Fast Change Detection Algorithm for Biological Annotations
Abstract. Warehousing heterogeneous, dynamic biological data is a key technique for biological data integration as it greatly improves performance. However, it requires complex mai...
Yang Song, Sourav S. Bhowmick, C. Forbes Dewey
SIGMOD
2004
ACM
157views Database» more  SIGMOD 2004»
14 years 4 months ago
BIO-AJAX: An Extensible Framework for Biological Data Cleaning
As databases become more pervasive through the biological sciences, various data quality issues regarding data legacy, data uniformity and data duplication arise. Due to the natur...
Katherine G. Herbert, Narain H. Gehani, William H....
PADL
2009
Springer
14 years 5 months ago
Using Bloom Filters for Large Scale Gene Sequence Analysis in Haskell
Analysis of biological data often involves large data sets and computationally expensive algorithms. Databases of biological data continue to grow, leading to an increasing demand ...
Ketil Malde, Bryan O'Sullivan
ICDE
2008
IEEE
139views Database» more  ICDE 2008»
14 years 5 months ago
Managing Biological Data using bdbms
Mohamed Y. Eltabakh, Mourad Ouzzani, Walid G. Aref...