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BIRD
2007
Springer
13 years 8 months ago
Fast Search Algorithms for Position Specific Scoring Matrices
Fast search algorithms for finding good instances of patterns given as position specific scoring matrices are developed, and some empirical results on their performance on DNA sequ...
Cinzia Pizzi, Pasi Rastas, Esko Ukkonen
BIRD
2007
Springer
118views Bioinformatics» more  BIRD 2007»
13 years 8 months ago
Biological Network Inference Using Redundancy Analysis
The paper presents MRNet, an original method for inferring genetic networks from microarray data. This method is based on maximum relevance/minimum redundancy (MRMR), an effective ...
Patrick Emmanuel Meyer, Kevin Kontos, Gianluca Bon...
BIRD
2007
Springer
13 years 8 months ago
An Evaluation of Text Retrieval Methods for Similarity Search of Multi-dimensional NMR-Spectra
Abstract. Searching and mining nuclear magnetic resonance (NMR)spectra of naturally occurring substances is an important task to investigate new potentially useful chemical compoun...
Alexander Hinneburg, Andrea Porzel, Karina Wolfram
BIRD
2007
Springer
168views Bioinformatics» more  BIRD 2007»
13 years 8 months ago
Ontology-Based MEDLINE Document Classification
Abstract. An increasing and overwhelming amount of biomedical information is available in the research literature mainly in the form of free-text. Biologists need tools that automa...
Fabrice Camous, Stephen Blott, Alan F. Smeaton
BIRD
2007
Springer
150views Bioinformatics» more  BIRD 2007»
13 years 10 months ago
Bayesian Inference for 2D Gel Electrophoresis Image Analysis
Two-dimensional gel electrophoresis (2DGE) is a technique to separate individual proteins in biological samples. The 2DGE technique results in gel images where proteins appear as d...
Ji Won Yoon, Simon J. Godsill, ChulHun Kang, Tae-S...
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 10 months ago
Annotation of LC/ESI-MS Mass Signals
Abstract. Mass spectrometry is the work-horse technology of the emerging eld of metabolomics. The identication of mass signals remains the largest bottleneck for a non-targeted a...
Ralf Tautenhahn, Christoph Böttcher, Steffen ...
BIRD
2007
Springer
117views Bioinformatics» more  BIRD 2007»
13 years 10 months ago
Enhancing Protein Disorder Detection by Refined Secondary Structure Prediction
More and more proteins have been observed to display functions through intrinsic disorder. Such structurally flexible regions are shown to play important roles in biological proces...
Chung-Tsai Su, Tong-Ming Hsu, Chien-Yu Chen, Yu-Ye...
BIRD
2007
Springer
13 years 10 months ago
Analysing Periodic Phenomena by Circular PCA
Experimental time courses often reveal a nonlinear behaviour. Analysing these nonlinearities is even more challenging when the observed phenomenon is cyclic or oscillatory. This me...
Matthias Scholz
BIRD
2007
Springer
112views Bioinformatics» more  BIRD 2007»
13 years 10 months ago
Patch Prediction of Protein Interaction Sites: Validation of a Scoring Function for an Online Server
An online protein interaction server has been designed and implemented to make predictions for 256 nonhomologous protein-protein interaction sites using patch analysis. Predictions...
Susan Jones, Yoichi Mukarami
BIRD
2007
Springer
120views Bioinformatics» more  BIRD 2007»
13 years 10 months ago
Joining Softassign and Dynamic Programming for the Contact Map Overlap Problem
Comparison of 3-dimensional protein folds is a core problem in molecular biology. The Contact Map Overlap (CMO) scheme provides one of the most common measures for protein structur...
Brijnesh J. Jain, Michael Lappe