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BMCBI
2005
134views more  BMCBI 2005»
8 years 5 months ago
Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST)
Background: BLAST is one of the most common and useful tools for Genetic Research. This paper describes a software application we have termed Windows .NET Distributed Basic Local ...
Scot E. Dowd, Joaquin Zaragoza, Javier R. Rodrigue...
BMCBI
2005
130views more  BMCBI 2005»
8 years 5 months ago
Squid - a simple bioinformatics grid
Background: BLAST is a widely used genetic research tool for analysis of similarity between nucleotide and protein sequences. This paper presents a software application entitled &...
Paulo C. Carvalho, Rafael V. Glória, Antoni...
BMCBI
2007
123views more  BMCBI 2007»
8 years 5 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
BMCBI
2007
134views more  BMCBI 2007»
8 years 5 months ago
PLAN: a web platform for automating high-throughput BLAST searches and for managing and mining results
Background: BLAST searches are widely used for sequence alignment. The search results are commonly adopted for various functional and comparative genomics tasks such as annotating...
Ji He, Xinbin Dai, Xuechun Zhao
BMCBI
2010
101views more  BMCBI 2010»
8 years 5 months ago
Enrichment of homologs in insignificant BLAST hits by co-complex network alignment
Background: Homology is a crucial concept in comparative genomics. The algorithm probably most widely used for homology detection in comparative genomics, is BLAST. Usually a stri...
Like Fokkens, Sandra M. C. Botelho, Jos Boekhorst,...
AINA
2008
IEEE
8 years 5 months ago
Communication Protocols and Message Formats for BLAST Parallelization on Cluster Systems
With the widespread use of BLAST, many parallel versions of BLAST on cluster systems are announced, but little work has been done for the parallel execution in the search for indi...
Hong-Soog Kim, Woo-Hyuk Jang, Dong-Soo Han
FASE
2005
Springer
8 years 10 months ago
Checking Memory Safety with Blast
Abstract. Blast is an automatic veriļ¬cation tool for checking temporal safety properties of C programs. Given a C program and a temporal safety property, Blast statically proves ...
Dirk Beyer, Thomas A. Henzinger, Ranjit Jhala, Rup...
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