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BMCBI
2004
119views more  BMCBI 2004»
13 years 4 months ago
PASS2: an automated database of protein alignments organised as structural superfamilies
Background: The functional selection and three-dimensional structural constraints of proteins in nature often relates to the retention of significant sequence similarity between p...
Anirban Bhaduri, Ganesan Pugalenthi, Ramanathan So...
BMCBI
2004
85views more  BMCBI 2004»
13 years 4 months ago
Frequent occurrence of recognition Site-like sequences in the restriction endonucleases
Background: There are two different theories about the development of the genetic code. Woese suggested that it was developed in connection with the amino acid repertoire, while C...
Jan C. Biro, Josephine M. K. Biro
BMCBI
2004
114views more  BMCBI 2004»
13 years 4 months ago
Profiled support vector machines for antisense oligonucleotide efficacy prediction
Background: This paper presents the use of Support Vector Machines (SVMs) for prediction and analysis of antisense oligonucleotide (AO) efficacy. The collected database comprises ...
Gustavo Camps-Valls, Alistair M. Chalk, Antonio J....
BMCBI
2004
113views more  BMCBI 2004»
13 years 4 months ago
Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide array
Background: To identify differentially expressed genes across experimental conditions in oligonucleotide microarray experiments, existing statistical methods commonly use a summar...
Leah Barrera, Chris Benner, Yong-Chuan Tao, Elizab...
BMCBI
2004
108views more  BMCBI 2004»
13 years 4 months ago
Improving the scaling normalization for high-density oligonucleotide GeneChip expression microarrays
Background: Normalization is an important step for microarray data analysis to minimize biological and technical variations. Choosing a suitable approach can be critical. The defa...
Chao Lu
BMCBI
2004
112views more  BMCBI 2004»
13 years 4 months ago
MuTrack: a genome analysis system for large-scale mutagenesis in the mouse
Background: Modern biological research makes possible the comprehensive study and development of heritable mutations in the mouse model at high-throughput. Using techniques spanni...
Erich J. Baker, Leslie Galloway, Barbara Jackson, ...
BMCBI
2004
61views more  BMCBI 2004»
13 years 4 months ago
PyEvolve: a toolkit for statistical modelling of molecular evolution
Andrew Butterfield, Vivek Vedagiri, Edward Lang, C...
BMCBI
2004
94views more  BMCBI 2004»
13 years 4 months ago
The tissue microarray data exchange specification: implementation by the Cooperative Prostate Cancer Tissue Resource
Background: Tissue Microarrays (TMAs) have emerged as a powerful tool for examining the distribution of marker molecules in hundreds of different tissues displayed on a single sli...
Jules J. Berman, Milton Datta, Andre Kajdacsy-Ball...
BMCBI
2004
129views more  BMCBI 2004»
13 years 4 months ago
Integrating partonomic hierarchies in anatomy ontologies
Background Anatomy ontologies play an increasingly important role in developing integrated bioinformatics applications. One of the primary relationships between anatomical tissues...
Albert Burger, Duncan Davidson, Yiya Yang, Richard...
BMCBI
2004
126views more  BMCBI 2004»
13 years 4 months ago
Visualization and analysis of microarray and gene ontology data with treemaps
Background: The increasing complexity of genomic data presents several challenges for biologists. Limited computer monitor views of data complexity and the dynamic nature of data ...
Eric H. Baehrecke, Niem Dang, Ketan Babaria, Ben S...