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BMCBI
2004
85views more  BMCBI 2004»
8 years 12 months ago
Benchmarking tools for the alignment of functional noncoding DNA
Daniel A. Pollard, Casey M. Bergman, Jens Stoye, S...
BMCBI
2004
56views more  BMCBI 2004»
8 years 12 months ago
Integrated web service for improving alignment quality based on segments comparison
Dariusz Plewczynski, Leszek Rychlewski, Yuzhen Ye,...
BMCBI
2004
116views more  BMCBI 2004»
8 years 12 months ago
Array-A-Lizer: A serial DNA microarray quality analyzer
Background: The proliferate nature of DNA microarray results have made it necessary to implement a uniform and quick quality control of experimental results to ensure the consiste...
Andreas Petri, Jan Fleckner, Mads Wichmann Matthie...
BMCBI
2004
148views more  BMCBI 2004»
8 years 12 months ago
Bioinformatics analysis of SARS coronavirus genome polymorphism
Background: We have compared 38 isolates of the SARS-CoV complete genome. The main goal was twofold: first, to analyze and compare nucleotide sequences and to identify positions o...
Gordana Pavlovic-Lazetic, Nenad S. Mitic, Milos V....
BMCBI
2004
169views more  BMCBI 2004»
8 years 12 months ago
A power law global error model for the identification of differentially expressed genes in microarray data
Background: High-density oligonucleotide microarray technology enables the discovery of genes that are transcriptionally modulated in different biological samples due to physiolog...
Norman Pavelka, Mattia Pelizzola, Caterina Vizzard...
BMCBI
2004
83views more  BMCBI 2004»
8 years 12 months ago
SUPFAM: A database of sequence superfamilies of protein domains
Background: SUPFAM database is a compilation of superfamily relationships between protein domain families of either known or unknown 3-D structure. In SUPFAM, sequence families fr...
Shashi B. Pandit, Rana Bhadra, V. S. Gowri, S. Bal...
BMCBI
2004
138views more  BMCBI 2004»
8 years 12 months ago
Constraint Logic Programming approach to protein structure prediction
Background: The protein structure prediction problem is one of the most challenging problems in biological sciences. Many approaches have been proposed using database information ...
Alessandro Dal Palù, Agostino Dovier, Feder...
BMCBI
2004
100views more  BMCBI 2004»
8 years 12 months ago
Handling multiple testing while interpreting microarrays with the Gene Ontology Database
Background: The development of software tools that analyze microarray data in the context of genetic knowledgebases is being pursued by multiple research groups using different me...
Michael V. Osier, Hongyu Zhao, Kei-Hoi Cheung
BMCBI
2004
110views more  BMCBI 2004»
8 years 12 months ago
Tools for loading MEDLINE into a local relational database
Background: Researchers who use MEDLINE for text mining, information extraction, or natural language processing may benefit from having a copy of MEDLINE that they can manage loca...
Diane E. Oliver, Gaurav Bhalotia, Ariel S. Schwart...
BMCBI
2004
102views more  BMCBI 2004»
8 years 12 months ago
No statistical support for correlation between the positions of protein interaction sites and alternatively spliced regions
Background: Alternative splicing is an efficient mechanism for increasing the variety of functions fulfilled by proteins in a living cell. It has been previously demonstrated that...
Marc N. Offman, Ramil N. Nurtdinov, Mikhail S. Gel...
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