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BMCBI
2005
151views more  BMCBI 2005»
8 years 5 months ago
ProMiner: rule-based protein and gene entity recognition
Background: Identification of gene and protein names in biomedical text is a challenging task as the corresponding nomenclature has evolved over time. This has led to multiple syn...
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevis...
BMCBI
2005
65views more  BMCBI 2005»
8 years 5 months ago
Overview of BioCreAtIvE: critical assessment of information extraction for biology
Lynette Hirschman, Alexander S. Yeh, Christian Bla...
BMCBI
2005
89views more  BMCBI 2005»
8 years 5 months ago
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society
Manuela Helmer-Citterich, Rita Casadio, Alessandro...
BMCBI
2005
134views more  BMCBI 2005»
8 years 5 months ago
Systematic feature evaluation for gene name recognition
In task 1A of the BioCreAtIvE evaluation, systems had to be devised that recognize words and phrases forming gene or protein names in natural language sentences. We approach this ...
Jörg Hakenberg, Steffen Bickel, Conrad Plake,...
BMCBI
2005
73views more  BMCBI 2005»
8 years 5 months ago
Evaluation of Glycine max mRNA clusters
Background: Clustering the ESTs from a large dataset representing a single species is a convenient starting point for a number of investigations into gene discovery, genome evolut...
Ronald L. Frank, Fikret Erçal
BMCBI
2005
105views more  BMCBI 2005»
8 years 5 months ago
Secondary structure assignment that accurately reflects physical and evolutionary characteristics
Background: Secondary structure is used in hierarchical classification of protein structures, identification of protein features, such as helix caps and loops, for fold recognitio...
Maria Vittoria Cubellis, Fabien Cailliez, Simon C....
BMCBI
2005
142views more  BMCBI 2005»
8 years 5 months ago
CLU: A new algorithm for EST clustering
Background: The continuous flow of EST data remains one of the richest sources for discoveries in modern biology. The first step in EST data mining is usually associated with EST ...
Andrey A. Ptitsyn, Winston Hide
BMCBI
2005
94views more  BMCBI 2005»
8 years 5 months ago
Reproducible Clusters from Microarray Research: Whither?
Motivation: In cluster analysis, the validity of specific solutions, algorithms, and procedures present significant challenges because there is no null hypothesis to test and no &...
Nikhil R. Garge, Grier P. Page, Alan P. Sprague, B...
BMCBI
2005
81views more  BMCBI 2005»
8 years 5 months ago
Metabolic Network Analysis: Implication And Application
Syed Asad Rahman, Pardha Saradhi Jonnalagadda, Jyo...
BMCBI
2005
143views more  BMCBI 2005»
8 years 5 months ago
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
Background: In expressed sequence tag (EST) sequencing, we are often interested in how many genes we can capture in an EST sample of a targeted size. This information provides ins...
Ji-Ping Z. Wang, Bruce G. Lindsay 0002, Liying Cui...
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