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BMCBI
2007
163views more  BMCBI 2007»
9 years 4 months ago
A coherent graph-based semantic clustering and summarization approach for biomedical literature and a new summarization evaluati
Background: A huge amount of biomedical textual information has been produced and collected in MEDLINE for decades. In order to easily utilize biomedical information in the free t...
Illhoi Yoo, Xiaohua Hu, Il-Yeol Song
BMCBI
2007
115views more  BMCBI 2007»
9 years 4 months ago
Local comparison of protein structures highlights cases of convergent evolution in analogous functional sites
Background: We performed an exhaustive search for local structural similarities in an ensemble of non-redundant protein functional sites. With the purpose of finding new examples ...
Gabriele Ausiello, Daniele Peluso, Allegra Via, Ma...
BMCBI
2007
93views more  BMCBI 2007»
9 years 4 months ago
SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition
Background: Predicting a protein’s structural class from its amino acid sequence is a fundamental problem in computational biology. Much recent work has focused on developing ne...
Iain Melvin, Eugene Ie, Rui Kuang, Jason Weston, W...
BMCBI
2007
63views more  BMCBI 2007»
9 years 4 months ago
Introduction to semantic e-Science in biomedicine
Huajun Chen, Yimin Wang, Zhaohui Wu
BMCBI
2007
95views more  BMCBI 2007»
9 years 4 months ago
Methods for estimating human endogenous retrovirus activities from EST databases
Background: Human endogenous retroviruses (HERVs) are surviving traces of ancient retrovirus infections and now reside within the human DNA. Recently HERV expression has been dete...
Merja Oja, Jaakko Peltonen, Jonas Blomberg, Samuel...
BMCBI
2007
79views more  BMCBI 2007»
9 years 4 months ago
Semi-supervised class discovery using quantitative phenotypes - CVD as a case study
ent> <title> <p>Highlights from the Third International Society for Computational Biology (ISCB) Student Council Symposium at the Fifteenth Annual International Conf...
Israel Steinfeld, Roy Navon, Diego Ardigò, ...
BMCBI
2007
131views more  BMCBI 2007»
9 years 4 months ago
An improved method for identifying functionally linked proteins using phylogenetic profiles
Background: Phylogenetic profiles record the occurrence of homologs of genes across fully sequenced organisms. Proteins with similar profiles are typically components of protein c...
Shawn Cokus, Sayaka Mizutani, Matteo Pellegrini
BMCBI
2007
98views more  BMCBI 2007»
9 years 4 months ago
Duration learning for analysis of nanopore ionic current blockades
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties, with potential implications ...
Alexander G. Churbanov, Carl Baribault, Stephen Wi...
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