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BMCBI
2008
97views more  BMCBI 2008»
13 years 4 months ago
Quantitative analysis of numerical solvers for oscillatory biomolecular system models
Background: This article provides guidelines for selecting optimal numerical solvers for biomolecular system models. Because various parameters of the same system could have drast...
Chang F. Quo, May D. Wang
BMCBI
2008
68views more  BMCBI 2008»
13 years 4 months ago
Automatic construction of rule-based ICD-9-CM coding systems
Richárd Farkas, György Szarvas
BMCBI
2008
96views more  BMCBI 2008»
13 years 4 months ago
The value of position-specific scoring matrices for assessment of protein allegenicity
Background: Bioinformatics tools are commonly used for assessing potential protein allergenicity. While these methods have achieved good accuracies for highly conserved sequences,...
Shen Jean Lim, Joo Chuan Tong, Fook Tim Chew, Mart...
BMCBI
2008
151views more  BMCBI 2008»
13 years 4 months ago
An integrated database-pipeline system for studying single nucleotide polymorphisms and diseases
Background: Studies on the relationship between disease and genetic variations such as single nucleotide polymorphisms (SNPs) are important. Genetic variations can cause disease b...
Jin Ok Yang, Sohyun Hwang, Jeongsu Oh, Jong Bhak, ...
BMCBI
2008
97views more  BMCBI 2008»
13 years 4 months ago
MCM-test: a fuzzy-set-theory-based approach to differential analysis of gene pathways
Background: Gene pathway can be defined as a group of genes that interact with each other to perform some biological processes. Along with the efforts to identify the individual g...
Lily R. Liang, Vinay Mandal, Yi Lu, Deepak Kumar
BMCBI
2008
71views more  BMCBI 2008»
13 years 4 months ago
Microarray analysis of gene expression during auditory hair cell regeneration in zebrafish (Danio rerio)
ent> <title> <p>UT-ORNL-KBRIN Bioinformatics Summit 2008</p> </title> <editor>Eric C Rouchka and Julia Krushkal</editor> <note>Meeting ...
Julie B. Schuck, Michael E. Smith, Xiaohong Li, Ni...
BMCBI
2008
93views more  BMCBI 2008»
13 years 4 months ago
Hybrid MM/SVM structural sensors for stochastic sequential data
In this paper we present preliminary results stemming from a novel application of Markov Models and Support Vector Machines to splice site classification of Intron-Exon and Exon-I...
Brian Roux, Stephen Winters-Hilt
BMCBI
2008
106views more  BMCBI 2008»
13 years 4 months ago
Ontology Design Patterns for bio-ontologies: a case study on the Cell Cycle Ontology
Background: Bio-ontologies are key elements of knowledge management in bioinformatics. Rich and rigorous bio-ontologies should represent biological knowledge with high fidelity an...
Mikel Egaña Aranguren, Erick Antezana, Mart...
BMCBI
2008
165views more  BMCBI 2008»
13 years 4 months ago
SWS: accessing SRS sites contents through Web Services
Background: Web Services and Workflow Management Systems can support creation and deployment of network systems, able to automate data analysis and retrieval processes in biomedic...
Paolo Romano 0001, Domenico Marra
BMCBI
2008
82views more  BMCBI 2008»
13 years 4 months ago
Gene expression profile of peripheral blood mononuclear cells in response to HIV-VLPs stimulation
Background: Baculovirus-expressed HIV-1 Pr55gag Virus-Like Particles (HIV-VLPs) induce maturation and activation of monocyte-derived dendritic cells (MDDCs) with a production of T...
Luigi Buonaguro, Alessandro Monaco, Eleonora Aric&...