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JIB
2007
119views more  JIB 2007»
13 years 4 months ago
VINEdb: a data warehouse for integration and interactive exploration of life science data
Control of cell proliferation, differentiation, activation and cell removal is crucial for the development and existence of multi-cellular organisms. Apoptosis, or programmed cell...
Sridhar Hariharaputran, Thoralf Töpel, Bj&oum...
TCS
2008
13 years 4 months ago
GemCell: A generic platform for modeling multi-cellular biological systems
The mass and complexity of biological information requires computer-aided simulation and analysis to help scientists achieve understanding and guide experimentation. Although livi...
Hila Amir-Kroll, Avital Sadot, Irun R. Cohen, Davi...
ALIFE
2005
13 years 4 months ago
A Gene Network Model for Developing Cell Lineages
Biological development is a remarkably complex process. A single cell, in an appropriate environment, contains sufficient information to generate a variety of differentiated cell ...
Nicholas Geard, Janet Wiles
SIAMSC
2008
97views more  SIAMSC 2008»
13 years 4 months ago
Long-Time Simulations on High Resolution Meshes to Model Calcium Waves in a Heart Cell
Abstract. A model for the flow of calcium in an atrial heart cell is given by a system of timedependent reaction-diffusion equations coupled by non-linear reaction terms. Calcium i...
Matthias K. Gobbert
JMLR
2006
96views more  JMLR 2006»
13 years 4 months ago
A Hierarchy of Support Vector Machines for Pattern Detection
We introduce a computational design for pattern detection based on a tree-structured network of support vector machines (SVMs). An SVM is associated with each cell in a recursive ...
Hichem Sahbi, Donald Geman
IJHIS
2006
94views more  IJHIS 2006»
13 years 4 months ago
A new fine-grained evolutionary algorithm based on cellular learning automata
In this paper, a new evolutionary computing model, called CLA-EC, is proposed. This model is a combination of a model called cellular learning automata (CLA) and the evolutionary ...
Reza Rastegar, Mohammad Reza Meybodi, Arash Hariri
BMCBI
2007
202views more  BMCBI 2007»
13 years 4 months ago
ProtNet: a tool for stochastic simulations of protein interaction networks dynamics
Background: Protein interactions support cell organization and mediate its response to any specific stimulus. Recent technological advances have produced large data-sets that aim ...
Massimo Bernaschi, Filippo Castiglione, Alessandra...
COMBINATORICS
2006
112views more  COMBINATORICS 2006»
13 years 4 months ago
Latin Squares with Forbidden Entries
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Jonathan Cutler, Lars-Daniel Ohman
BMCBI
2006
118views more  BMCBI 2006»
13 years 4 months ago
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images
Background: Knowledge of the subcellular location of a protein is critical to understanding how that protein works in a cell. This location is frequently determined by the interpr...
Shann-Ching Chen, Robert F. Murphy
APIN
2006
136views more  APIN 2006»
13 years 4 months ago
Cell modeling with reusable agent-based formalisms
Biologists are building increasingly complex models and simulations of cells and other biological entities, and are looking at alternatives to traditional representations. Making ...
Ken Webb, Tony White