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SIAMAM
2011
11 years 6 months ago
Persistence Results for Chemical Reaction Networks with Time-Dependent Kinetics and No Global Conservation Laws
New checkable criteria for persistence of chemical reaction networks are proposed, which extend and complement existing ones. The new results allow the consideration of reaction ra...
David Angeli, Patrick De Leenheer, Eduardo D. Sont...
CORR
2008
Springer
117views Education» more  CORR 2008»
11 years 11 months ago
Robust Stochastic Chemical Reaction Networks and Bounded Tau-Leaping
The behavior of some stochastic chemical reaction networks is largely unaffected by slight inaccuracies in reaction rates. We formalize the robustness of state probabilities to re...
David Soloveichik
CDC
2008
IEEE
100views Control Systems» more  CDC 2008»
12 years 1 months ago
Input-output instability patterns of Chemical Reaction Networks
This paper describes a criterion for qualitative analysis of open Chemical Reaction Networks endowed with mass-action kinetics. The method can be applied to an extremely broad clas...
David Angeli
CDC
2009
IEEE
126views Control Systems» more  CDC 2009»
12 years 4 months ago
On persistence of chemical reaction networks with time-dependent kinetics and no global conservation laws
— New checkable criteria for persistence of chemical reaction networks are proposed, which extend those obtained by the authors in previous work. The new results allow the consid...
David Angeli, Patrick De Leenheer, Eduardo D. Sont...
ECAL
2007
Springer
12 years 6 months ago
Catalysis by Self-Assembled Structures in Emergent Reaction Networks
We introduce a new variant of the dissipative particle dynamics (DPD) model that includes the possibility of dynamically forming and breaking strong bonds. The emergent reaction ki...
Gianluca Gazzola, Andrew Buchanan, Norman H. Packa...
KDD
2008
ACM
121views Data Mining» more  KDD 2008»
13 years 4 days ago
Reconstructing chemical reaction networks: data mining meets system identification
We present an approach to reconstructing chemical reaction networks from time series measurements of the concentrations of the molecules involved. Our solution strategy combines t...
Yong Ju Cho, Naren Ramakrishnan, Yang Cao
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