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CLUSTER
2003
IEEE
11 years 5 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
CLUSTER
2003
IEEE
11 years 5 months ago
Implications of a PIM Architectural Model for MPI
Memory may be the only system component that is more commoditized than a microprocessor. To simultaneously exploit this and address the impending memory wall, processing in memory...
Arun Rodrigues, Richard C. Murphy, Peter M. Kogge,...
CLUSTER
2003
IEEE
11 years 5 months ago
From Clusters to the Fabric: The Job Management Perspective
Clusters provide an outstanding cost/performance ratio, but their efficient orchestration, i.e. their cooperative management, maintenance, and use, still poses difficulties. Mor...
Thomas Röblitz, Florian Schintke, Alexander R...
CLUSTER
2003
IEEE
11 years 5 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
CLUSTER
2003
IEEE
11 years 5 months ago
Towards Load Balancing Support for I/O-Intensive Parallel Jobs in a Cluster of Workstations
While previous CPU- or memory-centric load balancing schemes are capable of achieving the effective usage of global CPU and memory resources in a cluster system, the cluster exhib...
Xiao Qin, Hong Jiang, Yifeng Zhu, David R. Swanson
CLUSTER
2003
IEEE
11 years 5 months ago
Design and Performance of the Dawning Cluster File System
Jin Xiong, Sining Wu, Dan Meng, Ninghui Sun, Guoji...
CLUSTER
2003
IEEE
11 years 5 months ago
Supporting Efficient Noncontiguous Access in PVFS over InfiniBand
Jiesheng Wu, Pete Wyckoff, Dhabaleswar K. Panda
CLUSTER
2003
IEEE
11 years 5 months ago
A System Recovery Benchmark for Clusters
Ira Pramanick, James Mauro, Ji Zhu
CLUSTER
2003
IEEE
11 years 5 months ago
Application-Bypass Reduction for Large-Scale Clusters
Process skew is an important factor in the performance of parallel applications, especially in large-scale clusters. Reduction is a common collective operation which, by its natur...
Adam Wagner, Darius Buntinas, Dhabaleswar K. Panda...
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