CMSB
2004
Springer
13 years 8 months ago
2004
Springer
We propose a robust estimation method of gene networks based on microarray gene expression data. It is well-known that microarray data contain a large amount of noise and some outl...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
This paper presents binders and operators, in the process calculi tradition, to reason about biological interactions. Special binders are added to wrap a process just as membranes ...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
In this paper we present a methodology to estimate rates of enzymatic reactions in metabolic pathways. Our methodology is based on applying stochastic logic learning in ensemble le...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
Biological systems have recently been shown to share many of the properties of reactive systems. This observation has led to the idea of using methods devised for the construction ...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
Abstract. The Systems Biology Markup Language (SBML) is an XMLbased exchange format for computational models of biochemical networks. SBML Level 2, whose definition was establishe...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
A refinement of Cardelli’s brane calculus [1] is introduced where membrane actions are directed. This modification brings the language closer to biological membranes and also o...
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
CMSB
2004
Springer
13 years 10 months ago
2004
Springer
We introduce a family of process calculi with dynamic nested membranes. In contrast to related calculi, including some developed for biological applications, active entities here a...